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Report for CCDS18030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18030.1 Public Mus musculus 4 Slc35a1 23 108 98 CCDS HistoryNCBI Gene:24060Re-query CCDS DB by CCDS ID:18030.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029970.13 ENSMUSP00000029970.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029970.13Link to Ensembl Protein Viewer:ENSMUSP00000029970.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029970Re-query CCDS DB by Protein ID:ENSMUSP00000029970
Original member NCBI NM_011895.3 NP_036025.2 Updated not alive Link to Nucleotide Sequence:NM_011895.3Link to Protein Sequence:NP_036025.2Re-query CCDS DB by Nucleotide ID:NM_011895Re-query CCDS DB by Protein ID:NP_036025
Current member NCBI NM_011895.4 NP_036025.2 Accepted alive Link to Nucleotide Sequence:NM_011895.4Link to Protein Sequence:NP_036025.2Re-query CCDS DB by Nucleotide ID:NM_011895Re-query CCDS DB by Protein ID:NP_036025Link to BLAST:NP_036025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036025.2 336 Q61420 336 100% 0 0

Chromosomal Locations for CCDS 18030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 34664106 34664230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34668926 34669060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34669487 34669663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34671780 34671846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34675030 34675182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34675472 34675631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34683285 34683462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34687244 34687259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGCTCCGGCGAGAGAAAATGTCAGTTTATTCTTCAAGCTGTACTGCTTGACGGTGATGACTCTGGTGG
CT
GCCGCTTACACCGTAGCTTTAAGATACACAAGGACAACAGCTGAAGAACTCTACTTCTCAACCACTGC
C
GTGTGTATCACAGAAGTGATAAAGTTACTGATAAGTGTTGGCCTGTTAGCTAAGGAAACTGGCAGTTTG
GGT
AGATTTAAAGCCTCATTAAGTGAAAATGTCTTGGGGAGCCCCAAGGAACTGGCGAAGTTGAGTGTGC
CA
TCACTAGTGTATGCTGTGCAGAACAACATGGCCTTCCTGGCTCTCAGTAATCTGGATGCAGCAGTGTA
C
CAGGTGACCTATCAACTGAAGATCCCCTGCACTGCTTTATGTACTGTTTTAATGTTAAATCGAACACTC
AGC
AAATTACAGTGGATTTCCGTCTTCATGCTGTGTGGTGGGGTCACACTCGTACAGTGGAAACCAGCCC
AA
GCTACAAAAGTCGTGGTAGCGCAGAATCCATTGTTAGGCTTTGGTGCTATAGCTATTGCTGTATTGTG
C
TCTGGATTTGCAGGAGTTTATTTTGAAAAAGTCTTAAAGAGTTCCGACACTTCCCTTTGGGTGAGAAAC
ATT
CAGATGTATCTGTCAGGGATCGTTGTGACGTTAGCTGGTACCTACTTGTCAGATGGAGCTGAAATTC
AA
GAAAAAGGATTCTTCTATGGCTACACGTATTATGTCTGGTTTGTTATCTTCCTTGCTAGTGTGGGAGG
C
CTCTACACGTCAGTGGTGGTGAAGTATACAGACAACATCATGAAAGGCTTCTCTGCTGCCGCAGCCATT
GTT
CTTTCTACCATTGCTTCAGTCCTACTGTTTGGATTACAGATAACACTTTCATTTGCACTGGGAGCTC
TT
CTTGTGTGTGTTTCCATATATCTCTATGGGTTACCCAGACAAGATACTACATCCATTCAACAAGAAGC
A
ACTTCAAAAGAGAGAATCATTGGTGTGTGA


Translation (336 aa):
MAPARENVSLFFKLYCLTVMTLVAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETGSL
G
RFKASLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQ
VTYQLKIPCTALCTVLMLNRTL
S
KLQWISVFMLCGGVTLVQWKPAQATKVV
VAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRN
I
QMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVI
FLASVGGLYTSVVVKYTDNIMKGFSAAAAI
V
LSTIASVLLFGLQI
TLSFALGALLVCVSIYLYGLPRQDTTSIQQEATSKERIIGV



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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