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Report for CCDS17948.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17948.1 |
Public |
Mus musculus |
4 |
Fam110b |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:242297](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17948.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 17948.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000054857.12 |
ENSMUSP00000062734.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000054857.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000062734.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000054857](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000062734](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000108380.1 |
ENSMUSP00000104017.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000108380.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000104017.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000108380](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000104017](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000171403.1 |
ENSMUSP00000127942.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000171403.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000127942.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000171403](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000127942](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001355716.1 |
NP_001342645.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001355716.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001342645.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001355716](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001342645](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001342645.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_173426.3 |
NP_775602.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_173426.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_775602.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_173426](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_775602](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_775602.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 17948.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1101 nt): ATGCCCACGGAGACTCTACAGACAGGTAGCATGGTGAAGCCTGTCAGCCCCGCGGGCACCTTCACGTCGG CGGTGCCCCTGCGCATCCTGAACAAAGGACCCGACTACTTCCGCAGGCAGGCTGAGCCCAACCCCAAGAG ACTCAGTGCGGTAGAGCGGCTGGAGGCTGACAAGGCCAAATACGTCAAGAGCCAGGAGGTGATCAATGCC AAGCAGGAGCCAGTGAAGCCGGCCGTGTTGGCCAAGCCCCCTGTGTGCCCAGGAACCAAGCGTGCACTGG GCAGCCCCACTCTCAAGGTGTTCGGCAACCATGCCAAGACCGAGAGCGGTGTGCAACGTGAGACCCTCAA GCTTGAGATCCTCAAGAACATCATCAACAGCTCAGAGGGGTCCAGTTCTGGCTCCGGCCACAAGCATAGC TCCCGAAACTGGCCGCCTCACAGGGACACCACTGACCTGCACCGGCATTCCTTCGCAGAGTCGCTGAAGG TGTACCCTACACCTGGCCATGGCAGCCCGCAGGAGAGCAGCTCCCACGTGAGCAGGAGGCTGCTGGAGCA GTCCGCGGAGACCTTCCTGCACGTCTCACACAGCTCCTCAGACATCCGCAAAGTGACCAGTGTGAAGCCC CTTAAAGCCATCCCCTGCAGCAGTTCAGCCCCTCCCCTGCCTCCCAAGCCCAAGGTGGCTGCCATGAAGT CCCCCGAGGCTGACCAGGTGGAACCAGCCTGTGGGGTCAGCCGGAGACCTTCCCTTCAGCGGTCCAAGTC AGACTTGAGTGACAGGTATTTCCGAGTAGATGCAGATGTGGAGAGGTTCTTCAACTACTGCGGACTTGAC CCGGAAGAGCTGGAAAACCTTGGCATGGAGAACTTTGCAAGGGCTAATTCTGACATCATATCTCTCAACT TCCGCAGCGCAAGCATGATCAGCTCAGACTGTGAACAGTCTCAGGACAGTAACAGTGACCTTAGAAATGA TGACAGTGCCAATGACCGGGTGCCATATGGCATTTCTGCCATTGAAAGAAATGCTAGAATCATCAAGTGG CTATATAGCATCAAACAAGCTAGAGAGTCACAGAAGGTGTCCCACGTGTAA
Translation (366 aa): MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINA KQEPVKPAVLAKPPVCPGTKRALGSPTLKVFGNHAKTESGVQRETLKLEILKNIINSSEGSSSGSGHKHS SRNWPPHRDTTDLHRHSFAESLKVYPTPGHGSPQESSSHVSRRLLEQSAETFLHVSHSSSDIRKVTSVKP LKAIPCSSSAPPLPPKPKVAAMKSPEADQVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLD PEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKW LYSIKQARESQKVSHV
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