NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51972.1 Public Mus musculus 7 Gp6 23 108 98 CCDS HistoryNCBI Gene:243816Re-query CCDS DB by CCDS ID:51972.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206928.1 ENSMUSP00000145740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206928.1Link to Ensembl Protein Viewer:ENSMUSP00000145740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206928Re-query CCDS DB by Protein ID:ENSMUSP00000145740
Original member Current member NCBI NM_001163014.1 NP_001156486.1 Accepted alive Link to Nucleotide Sequence:NM_001163014.1Link to Protein Sequence:NP_001156486.1Re-query CCDS DB by Nucleotide ID:NM_001163014Re-query CCDS DB by Protein ID:NP_001156486Link to BLAST:NP_001156486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156486.1 313 P0C191 313 100% 0 0

Chromosomal Locations for CCDS 51972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4368863 4369035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4370154 4370204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4371603 4371653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4373210 4373263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4384856 4385140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4394107 4394364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4394493 4394528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4397651 4397684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCTCCAGCCTCACCCACTTTCTTCTGTATTGGGCTGTGTGTACTGCAAGTGATCCAAACACAGAGTG
GCCCACTCCCCAAGCCTTCCCTCCAGGCTCAGCCCAGTTCCCTGGTACCCCTGGGTCAGTCAGTTATTCT
GAGGTGCCAGGGACCTCCAGATGTGGATTTATATCGCCTGGAGAAACTGAAACCGGAGAAGTATGAAGAT
CAAGACTTTCTCTTCATTCCAACCATGGAAAGAAGTAATGCTGGACGGTATCGATGCTCTTATCAGAATG
GGAGTCACTGGTCTCTCCCAAGTGACCAGCTTGAGCTAATTGCTACAGGTGTGTATGCTAAACCCTCACT
CTCAGCTCATCCCAGCTCAGCAGTCCCTCAAGGCAGGGATGTGACTCTGAAGTGCCAGAGCCCATACAGT
TTTGATGAATTCGTTCTATACAAAGAAGGGGATACTGGGTCTTATAAGAGACCTGAGAAATGGTACCGGG
CCAATTTCCCCATCATCACAGTGACTGCTGCTCACAGTGGGACGTACCGGTGTTACAGCTTCTCCAGCTC
ATCTCCATACCTGTGGTCAGCCCCGAGTGACCCTCTAGTGCTTGTGGTTACTGGACTCTCTGCCACTCCC
AGCCAGGTACCCACGGAAGAATCATTTCCTGTGACAGAATCCTCCAGGAGACCTTCCATCTTACCCACAA
ACAAAATATCTACAACTGAAAAGCCTATGAATATCACTGCCTCTCCAGAGGGGCTGAGCCCTCCATTTGG
TTTTGCTCATCAGCACTATGCCAAGGGGAATCTGGTCCGGATATGCCTTGGTGCCACGATTATAATAATT
TTGTTGGGGCTTCTAGCAGAGGATTGGCACAGTCGGAAGAAATGCCTGCAACACAGGATGAGAGCTTTGC
AAAGGCCACTACCACCCCTCCCACTGGCCTAG

Translation (313 aa):
MSPASPTFFCIGLCVLQVIQTQSGPLPKPSLQAQPSSLVPLGQSVILRCQGPPDVDLYRLEKLKPEKYED
QDFLFIPTMERSNAGRYRCSYQNGSHWSLPSDQLELIATGVYAKPSLSAHPSSAVPQGRDVTLKCQSPYS
FDEFVLYKEGDTGSYKRPEKWYRANFPIITVTAAHSGTYRCYSFSSSSPYLWSAPSDPLVLVVTGLSATP
SQVPTEESFPVTESSRRPSILPTNKISTTEKPMNITASPEGLSPPFGFAHQHYAKGNLVRICLGATIIII
LLGLLAEDWHSRKKCLQHRMRALQRPLPPLPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH