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Report for CCDS21469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21469.1 Public Mus musculus 7 Tsku 23 108 98 CCDS HistoryNCBI Gene:244152Re-query CCDS DB by CCDS ID:21469.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094161.10 ENSMUSP00000091713.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094161.10Link to Ensembl Protein Viewer:ENSMUSP00000091713.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094161Re-query CCDS DB by Protein ID:ENSMUSP00000091713
Original member Current member EBI ENSMUST00000165901.7 ENSMUSP00000127242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165901.7Link to Ensembl Protein Viewer:ENSMUSP00000127242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165901Re-query CCDS DB by Protein ID:ENSMUSP00000127242
Original member Current member EBI ENSMUST00000165257.7 ENSMUSP00000128431.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165257.7Link to Ensembl Protein Viewer:ENSMUSP00000128431.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165257Re-query CCDS DB by Protein ID:ENSMUSP00000128431
Original member Current member EBI ENSMUST00000164726.7 ENSMUSP00000130917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164726.7Link to Ensembl Protein Viewer:ENSMUSP00000130917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164726Re-query CCDS DB by Protein ID:ENSMUSP00000130917
Original member Current member EBI ENSMUST00000167405.2 ENSMUSP00000131789.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167405.2Link to Ensembl Protein Viewer:ENSMUSP00000131789.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167405Re-query CCDS DB by Protein ID:ENSMUSP00000131789
Original member Current member EBI ENSMUST00000179780.2 ENSMUSP00000137437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179780.2Link to Ensembl Protein Viewer:ENSMUSP00000137437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179780Re-query CCDS DB by Protein ID:ENSMUSP00000137437
Original member Current member EBI ENSMUST00000206414.1 ENSMUSP00000146025.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206414.1Link to Ensembl Protein Viewer:ENSMUSP00000146025.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206414Re-query CCDS DB by Protein ID:ENSMUSP00000146025
Original member Current member NCBI NM_001024619.3 NP_001019790.1 Accepted alive Link to Nucleotide Sequence:NM_001024619.3Link to Protein Sequence:NP_001019790.1Re-query CCDS DB by Nucleotide ID:NM_001024619Re-query CCDS DB by Protein ID:NP_001019790Link to BLAST:NP_001019790.1
Original member Current member NCBI NM_001168539.1 NP_001162011.1 Accepted alive Link to Nucleotide Sequence:NM_001168539.1Link to Protein Sequence:NP_001162011.1Re-query CCDS DB by Nucleotide ID:NM_001168539Re-query CCDS DB by Protein ID:NP_001162011Link to BLAST:NP_001162011.1
Original member Current member NCBI NM_001168540.1 NP_001162012.1 Accepted alive Link to Nucleotide Sequence:NM_001168540.1Link to Protein Sequence:NP_001162012.1Re-query CCDS DB by Nucleotide ID:NM_001168540Re-query CCDS DB by Protein ID:NP_001162012Link to BLAST:NP_001162012.1
Original member Current member NCBI NM_001168541.1 NP_001162013.1 Accepted alive Link to Nucleotide Sequence:NM_001168541.1Link to Protein Sequence:NP_001162013.1Re-query CCDS DB by Nucleotide ID:NM_001168541Re-query CCDS DB by Protein ID:NP_001162013Link to BLAST:NP_001162013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019790.1 354 Q8CBR6 354 100% 0 0
NP_001162011.1 354 Q8CBR6 354 100% 0 0
NP_001162012.1 354 Q8CBR6 354 100% 0 0
NP_001162013.1 354 Q8CBR6 354 100% 0 0

Chromosomal Locations for CCDS 21469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 98352058 98353122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCTGTGCTCTCTGTTCCTGCTGCTGCTGGCCGTGGGCAGAGTGCAGACGACTCGGCCGTGTTTCCCTG
GCTGCCAGTGTGAAGAAGAGACATTCGGCCTCTTTGACAGTTTCAGCCTGATCCGTGTGGACTGCAGCAG
CCTGGGCCCCCACATTGTGCCTGTGCCCATCCCTTTGGATACAGCCCACCTGGACCTGTCTTCCAACCGG
CTAGAAACCGTGAATGAGTCAGTCTTGGCAGGGCCAGGCTATACCACACTGGCTGGCCTGGATCTCAGTT
ACAACCTGCTCACCAGCATCATGCCCTCTGCCTTCTCCCGACTGCGCTACCTGGAGTCACTTGACCTCAG
CCACAATGGCCTGGCAGCCCTGCCGGCAGAGATTTTCACCAGCTCCCCCTTGAGTGACATCAATCTGAGC
CATAACCGACTACGAGAGGTCTCGATATCTGCCTTCACCACCCACAGCCAGGGCCGGGCACTGCACGTGG
ACCTATCCCACAATCTTATCCATCGCCTGCTTCCCCATCCAGCCCGGGCCAGCCTGCCTGCACCTACCAT
TCAGAGCCTGAACCTGTCCTGGAACCGATTCCGAGCTGTGCCCGATCTCCGAGACCTACCCCTGCGTTAC
CTGAGCCTGGATGGGAACCCTCTGGCTACCATCAACCCAGATGCCTTCATGGGGCTGGCAGGCCTCACCC
ACCTGTCACTGGCCAGCCTGCAGGGCATCCTCCATCTACCACCCCACGGCTTCCGGGAGCTCCCAGGCCT
TCAGGTCCTGGACTTGTCAGGCAACCCCAAGCTCAAGTGGGCAGGAGCTGAGGTGTTTTCAGGCCTGGGT
TTGCTGCAGGAACTAGACCTGTCAGGCTCCAGCTTGGTGCCCCTGCCTGAGATGCTGCTGCATCACCTCC
CTGCTTTACAAAGTGTCAGCGTAGGCCAGGATGTGCAGTGCCGGCGCCTGGTGCGGGAGGGCGCCTACCA
CCGGCAGCCTGGCTCCAGCCCTAAGGTAGTCCTACACTGTGGAGACACCCAGGAATCTGCTGCCAGGGGC
CCAGACATTTTGTGA

Translation (354 aa):
MLCSLFLLLLAVGRVQTTRPCFPGCQCEEETFGLFDSFSLIRVDCSSLGPHIVPVPIPLDTAHLDLSSNR
LETVNESVLAGPGYTTLAGLDLSYNLLTSIMPSAFSRLRYLESLDLSHNGLAALPAEIFTSSPLSDINLS
HNRLREVSISAFTTHSQGRALHVDLSHNLIHRLLPHPARASLPAPTIQSLNLSWNRFRAVPDLRDLPLRY
LSLDGNPLATINPDAFMGLAGLTHLSLASLQGILHLPPHGFRELPGLQVLDLSGNPKLKWAGAEVFSGLG
LLQELDLSGSSLVPLPEMLLHHLPALQSVSVGQDVQCRRLVREGAYHRQPGSSPKVVLHCGDTQESAARG
PDIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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