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Report for CCDS22266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22266.1 Public Mus musculus 8 Triml1 23 108 98 CCDS HistoryNCBI Gene:244448Re-query CCDS DB by CCDS ID:22266.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059692.3 ENSMUSP00000050267.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059692.3Link to Ensembl Protein Viewer:ENSMUSP00000050267.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059692Re-query CCDS DB by Protein ID:ENSMUSP00000050267
Original member Current member NCBI NM_177742.4 NP_808410.1 Accepted alive Link to Nucleotide Sequence:NM_177742.4Link to Protein Sequence:NP_808410.1Re-query CCDS DB by Nucleotide ID:NM_177742Re-query CCDS DB by Protein ID:NP_808410Link to BLAST:NP_808410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808410.1 470 Q8BVP1 470 100% 0 0

Chromosomal Locations for CCDS 22266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 43130150 43130688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43136276 43136373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43136537 43136559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43138567 43138797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43140643 43140738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 43140967 43141392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGTCCAACCATGAGAAAATGTCCACAACAGATTTGATGGAGAACCTCAGGGAAGAGCTGACCTGTTTCA
TCTGCTTGGATTATTTCAGCAGTCCAGTGACCACCGAGTGTGGGCACAGCTTTTGTCTGATGTGCCTCCT
CAAGAGTTGGGAGGAGCACAACACACCTTTATCTTGTCCTGAATGCTGGAGGACTTTGGGAGCCCCACAT
TTTCAAGCCAACGAGCGGCTGGGGAGACTGGCTAATATTGGCAGACAGCTGAGATCGCAGGTGCTGCAGA
GCGAGGATGAGCAGAGCATCTGTGGGAGAATGCCAGGGCCTAGTTGGGTGTTCTCTGACGATGAGCAGAG
TGTCATTAATGTCTCACCTCCAAGTCAAGGGACGAACAAGGCGTGTTTCTCAAGTGAGGCTGAGGAGCAG
CACAAAGAAAAACTCCAAGATATCATAAATATTTTACGGAAAAAGAAGAAGGAAGTTCAGGCCATCCTGA
ACCATGAGAAGGAACGAGTGATGTTGTGTAAGGAGGAGACAAAGACTTGTAAGCAGGTCGTTGTGTCTGA
ATACATGAAGATGCACCAGTTCCTCAAGGAAGAGGAACAGCTCCAGCTCCAGCTCCTGGAGAGGGAGGAG
AAGGCGAACATGAAGAAGCTGAGGGAAAATGAGATCCAGCTGACCCAGCAAATCCGCCGCCTCGGCAAAA
TGATTGGGCGGATTGAGTCTACCTGTCAGAACTTGACGTTAGAATCTTTTGAGGAAGTCAAAGGAGCCAT
GGATCGGTATGAGTCCCTGTTGTTTCAGTCTCCAGAGACCACCATCACGGAACTGAGCCTGTGTCACATC
ACTGGGATGAGGGAGATGCTGCGAAAATTCAGCACAGATATAACTCTAGATCCAGCCACAGCCAATGCTT
ACCTGCTTTTGTCCGAAGATCTGAAAAGTGTGCGGTATGGAGGGACCAGGCAGCAATTACCTGACAACCC
AGAGCGATTTGATCAGTCTGCAACTGTGTTGGGAGCTCAGATCTTCACCTGCGGGAGACACTACTGGGAA
GTGGAAGTGGGAAAGAAGACGGAGTGGGAAGTGGGGATCTGCAAGGACTCTGTGAACAGAAAGGGGAATC
TCCCCAAACCGCCCGGGGACCTCTTCTCACTCATAGGCTTAAAAATTGGCGACGATTACAGTCTCTGGGT
TTCATCTCCCCTGAAAGGGCAACATGTCCGAGAACCCGTGCATAAAGTTGGTGTGTTCTTGGACTATGAC
TCTGGACACATAGCCTTCTACAATGCGACAGATGAGTCCCTCATCTACAGCTTCCCTCCGACCCCTTTCC
ATGAAGCTCTCAGACCTATCTTTTCCCCTTGTCTTCCGAATGAGGGGACGAATACAGACCCTCTTATCAT
CTGCCACATCTGA

Translation (470 aa):
MSNHEKMSTTDLMENLREELTCFICLDYFSSPVTTECGHSFCLMCLLKSWEEHNTPLSCPECWRTLGAPH
FQANERLGRLANIGRQLRSQVLQSEDEQSICGRMPGPSWVFSDDEQSVINVSPPSQGTNKACFSSEAEEQ
HKEKLQDIINILRKKKKEVQAILNHEKERVMLCKEETKTCKQVVVSEYMKMHQFLKEEEQLQLQLLEREE
KANMKKLRENEIQLTQQIRRLGKMIGRIESTCQNLTLESFEEVKGAMDRYESLLFQSPETTITELSLCHI
TGMREMLRKFSTDITLDPATANAYLLLSEDLKSVRYGGTRQQLPDNPERFDQSATVLGAQIFTCGRHYWE
VEVGKKTEWEVGICKDSVNRKGNLPKPPGDLFSLIGLKIGDDYSLWVSSPLKGQHVREPVHKVGVFLDYD
SGHIAFYNATDESLIYSFPPTPFHEALRPIFSPCLPNEGTNTDPLIICHI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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