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Report for CCDS57623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57623.1 Public Mus musculus 8 Sgo2b 23 108 98 CCDS HistoryNCBI Gene:244495Re-query CCDS DB by CCDS ID:57623.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179944.1 ENSMUSP00000136323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179944.1Link to Ensembl Protein Viewer:ENSMUSP00000136323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179944Re-query CCDS DB by Protein ID:ENSMUSP00000136323
Original member Current member NCBI NM_001195687.1 NP_001182616.1 Accepted alive Link to Nucleotide Sequence:NM_001195687.1Link to Protein Sequence:NP_001182616.1Re-query CCDS DB by Nucleotide ID:NM_001195687Re-query CCDS DB by Protein ID:NP_001182616Link to BLAST:NP_001182616.1

Chromosomal Locations for CCDS 57623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 63924694 63924866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63926466 63929090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63931255 63931496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63938368 63938453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63940024 63940101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63941004 63941179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63943097 63943220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3504 nt):
ATGGAGTACCCAGGGATAGAAGTTGACGCTGTTACCTCTGGAATTCAGAGACGTGTGAAGGACCGAATTG
CAAAGACAAAGTTGAGTGTTTCTCTTGCTTCAAAGATCAAAACAAAACTATTCAACAATTCTTCTATGTT
CAGGATCTCTCTAAAGCACAACAACAGAGCACTAGCGCGGGCCCTTAGTAAAGAGAAAGAGAACTCTCGA
AAAATTACTACCGAAAAGATGCAATTACAGAAAGAAGTAGAGAAACTGAATTTTGAGAATACCTTTCTTC
GCTTAAAGCTAAATAACTTGAATGAGAAGCTTAAAGAGATAGAATCACATGTGGCCAATAATTTGTTAGC
TGCAATTGAAACGAGCAGTCTTTCTGAGTTCCATCAAAGTTCTTCTTTCCTGTCAGCTAACAAGAAACAA
AGGCGGAGTAATCAATGCAAGTCTGCACATCTTCCATATGAAAGGGTTCTATTAACTTCAGAAAATGATG
ATGATGATGATGATGGTGCTGATGATAAATGGAATACAAAGTGTAGCAACAGAATTATATCAAAGACCTC
ACCTGATACTACTTCTTTGGTATCAAGACAACCTTTATCCTTACATCAATGTAATTTGGAATTATTCCTT
CCTAAAGAAGGTAATCAGAAAACATGTGGTTCAGGTCATTCAGAACATACTTCAAGTGTTGATGTACTTC
CTAATGAGAGCCATTGTCACTCAGATCAAAGTCCTCAGAGTTCTCCGAGTGAGATGAAAACTGGTCCATC
TCCCAACCTTAGAAGGGGAGAAAAATTAACACTTAAAAATATTACTCAGAGGAAGAAGTGTGTGTCTTCA
ACTGTAGACATACTGTATGTGTCAGATTTAGAAAACCAATCAATATCAAGTCCAGGATCAAATTGGAATA
ATGAGATAAATGGCCATACCAATGAAACCAGTAATAACACACAAAGAAATACCGAGTGTTTTCTTGGCTT
ACCTTCTGAATCTTCCAGTGAGCCTTATGTAAAGCGCATGGAGCAAGTGCAGAAAACTGACAACTTTCAT
TTTCATAACACTGTGTCTGAAGCCGCTGATGTGGAGTTAACTGCTACTGATGTAGGCAAGATTGTAATAG
TTTCAAAGAGCAATAAAAATCAAATTAAGAAAAAGGCAGATTGTAGAAAGGAGACTTTCAGAAAAGTGAA
AGGTGCAAGCTCTGATAAAAAGAGAGAAAGCTCAAAGAGAGAATGTAAAGATGGTTCAGAAGTAGGTGCT
GAAAAAGAGACTGATGAAAGCAGAGCAAAAAGAGGCTCTGGTGTCCTGGATGGCAGAGGGGATTCAGAAG
AGCCAAACTGTATTTCCAGTACTGAGCAGCCATCTCAGGTAAACACGCAAAAGAAAATAACCCCCCAGAA
CAGCTCAGATCAGGAGAACATTCAAAATAAAAAGAGGAGGCGAACATATATGCTAGATGAGCAAGAGGAA
GCAAACCCTTTCTCCAGACATTCAGTCAAATTCCTTCAAGATGGTAAATTTGACCTGTGTCAGAAAACCC
TACATCATAATTTAAGTAACCCTTCTCGACAGACATTTGTGATTCATAAATCAGAAAAAGGTAACTTATT
TCCAAATCAAGAAGATAAGGACACCATTTCTGAAAGCCTAGAAGTTACAAATGAATTTCATACAGCTGAT
CATTCCATCAGAGAAAATGTATGTGACCATGAGGCTCAGACAACATTGGGCTTGAGAAAGTCTGTCAATG
CTCAACAAAATCTAACAAAGAAGACTAAGCAGAAAATAAATCGAGGAACAAAAATAGTTTCTAGCATGAA
ACAAATATATGAGGACAATGATAAAGATATGCACTTCCTAGAAAAAGGCAACTTTCCCTTCCAAACCCAA
GCAGATAAAGTAACCACCAGTGGAAGTCTAGAAGCTACAGAAGAATTTGATACACCTCTTTTCTTCACAA
GAGTTAATGGAAGCTTGCGAGACTGTGAGACCCAGAATGTTATGGATCTGCACAAGCAAATTACTGGTAT
ATACCCTGCTCAGAATGAGTCTCAAATGAGCAAAAATCCTAGGCAGAAAGTAAATCGCAAGACAGCAGTA
ATTTCTGGAGTGAATTGTTTTAGTAGTGACAAAGGTGTTCATTGTTCAGAAAAGGATAAGTCTTTCTTGC
TACAAAAGGATAAAGACATTCTTGGAACCTTAAAAGACTTAAGTGAGTCTGATATGCCTGCTCTTTGTAA
CCAAGATAGTGCAGAGCCATATAAGTCTGAAATGCTCTTGGGGTTGAAAAAACATGACCATGATATGCAG
CCTGCTTGTCAAGGTGATTCAAAAGTAGATAAGAAGCTTAGAAAACAGGCAAATCGAAAGACAGAAATAA
TTTCTAAAATCACCCAAATACATGACAATGATGGAGGAAGTGCACATGACCCACTAAATAAGAAGCTCGG
TCAGAAGGTTAATATATCAGATATCATTTCTCAAATGAACCAACTATATGAGACTACTATTGAAGATGGG
AATGGCTTTAAAAGCTCTGTCAAAGATTGCCAAGGTGTTATAAGTTGTGACTTGGGGGAAATCAACAGTA
ATAAAAAGGAAAATTATGATCCAATTCAAGATCCTTGCACACTGGTTAAAAAAACAAAGAGAAAGGGATC
GTGTAACTCAGGGAGCAGTTTGGCAGGAGATAAGAACAGGTGTAGTCTGCGGTTAACAGATTCTTCCCAG
GTGTCGGTCACCTTAGACTCTGGCTTAAGACACCATCCAAACGAAGCAGATACTAGTCCTGGAGAGTGGA
CTAACCTGCCAAAGAAGCAGAAACCAATCGTTGTGAGTTCACCGGGAGATGCCTTCTCTGTGAGTGCGGG
AAAAGCAAGAAGCAACCCAGCCAAAGCAGTTAGTGAAATGACATCCAAATTAAAGAAAAGAAAGACTCAT
CTAGGTTGTTCTCCTGAAACCCATGGACCAGTGGAGATAACACCCAACACTGACCTCACTAAGGCTGTTG
ACTCCCAACAGACTGAGAAGGAGAACTATTTGGAAAAGGAGAACTATTTGGAGAATGAGAAAATTGCCAA
GAGGAAGCCAGACTTCTGTATGAAGGTGTTGAAACCTTTATCTCAGACATGTTCATCTAATATAAAGAAT
TCTTCCTTGGACAGTATGTGTAAGAGTTCGCTACCTTTGAGTATTTCTTCTAGTAAAAACCTGATGCTGG
AAGAAAGTTCTTCCCTGGAGAGTACATGCATCTTTCAAGTTGGTGATGATGCACGTGAGAAGATAACGGC
AGGCACTCATAATCCCCACAGAACACAAAAGTCTAGACCAGGTAGCAGAACGTCCCTGGTCTTGGTGGAT
ACCAGTTCTGTTTCGAGTAACACTGCTAACCCTGAGAATGAGTCAGAAGAGCAGTCTTCACCCCCGAGGA
GAAGGAAAAGACAGTGCGCCCCTCTCAATCTGACAGAGCCGAGCCTTAAAAGGCAAGTGTGGCAGCGTTG
TTAA

Translation (1167 aa):
MEYPGIEVDAVTSGIQRRVKDRIAKTKLSVSLASKIKTKLFNNSSMFRISLKHNNRALARALSKEKENSR
KITTEKMQLQKEVEKLNFENTFLRLKLNNLNEKLKEIESHVANNLLAAIETSSLSEFHQSSSFLSANKKQ
RRSNQCKSAHLPYERVLLTSENDDDDDDGADDKWNTKCSNRIISKTSPDTTSLVSRQPLSLHQCNLELFL
PKEGNQKTCGSGHSEHTSSVDVLPNESHCHSDQSPQSSPSEMKTGPSPNLRRGEKLTLKNITQRKKCVSS
TVDILYVSDLENQSISSPGSNWNNEINGHTNETSNNTQRNTECFLGLPSESSSEPYVKRMEQVQKTDNFH
FHNTVSEAADVELTATDVGKIVIVSKSNKNQIKKKADCRKETFRKVKGASSDKKRESSKRECKDGSEVGA
EKETDESRAKRGSGVLDGRGDSEEPNCISSTEQPSQVNTQKKITPQNSSDQENIQNKKRRRTYMLDEQEE
ANPFSRHSVKFLQDGKFDLCQKTLHHNLSNPSRQTFVIHKSEKGNLFPNQEDKDTISESLEVTNEFHTAD
HSIRENVCDHEAQTTLGLRKSVNAQQNLTKKTKQKINRGTKIVSSMKQIYEDNDKDMHFLEKGNFPFQTQ
ADKVTTSGSLEATEEFDTPLFFTRVNGSLRDCETQNVMDLHKQITGIYPAQNESQMSKNPRQKVNRKTAV
ISGVNCFSSDKGVHCSEKDKSFLLQKDKDILGTLKDLSESDMPALCNQDSAEPYKSEMLLGLKKHDHDMQ
PACQGDSKVDKKLRKQANRKTEIISKITQIHDNDGGSAHDPLNKKLGQKVNISDIISQMNQLYETTIEDG
NGFKSSVKDCQGVISCDLGEINSNKKENYDPIQDPCTLVKKTKRKGSCNSGSSLAGDKNRCSLRLTDSSQ
VSVTLDSGLRHHPNEADTSPGEWTNLPKKQKPIVVSSPGDAFSVSAGKARSNPAKAVSEMTSKLKKRKTH
LGCSPETHGPVEITPNTDLTKAVDSQQTEKENYLEKENYLENEKIAKRKPDFCMKVLKPLSQTCSSNIKN
SSLDSMCKSSLPLSISSSKNLMLEESSSLESTCIFQVGDDAREKITAGTHNPHRTQKSRPGSRTSLVLVD
TSSVSSNTANPENESEEQSSPPRRRKRQCAPLNLTEPSLKRQVWQRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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