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Report for CCDS53076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53076.1 Public Mus musculus X Tm9sf5 23 108 98 CCDS HistoryNCBI Gene:245423Re-query CCDS DB by CCDS ID:53076.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 53076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114725.2 ENSMUSP00000110373.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114725.2Link to Ensembl Protein Viewer:ENSMUSP00000110373.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114725Re-query CCDS DB by Protein ID:ENSMUSP00000110373
Original member Current member NCBI NM_001128625.2 NP_001122097.1 Accepted alive Link to Nucleotide Sequence:NM_001128625.2Link to Protein Sequence:NP_001122097.1Re-query CCDS DB by Nucleotide ID:NM_001128625Re-query CCDS DB by Protein ID:NP_001122097Link to BLAST:NP_001122097.1

Chromosomal Locations for CCDS 53076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 57409179 57409373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57414260 57414327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57415767 57415860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57417659 57417786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57418149 57418278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57421843 57421970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57423265 57423376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57433209 57433288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57436410 57436518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57437384 57437516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57439564 57439683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57439888 57439945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57463081 57463240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57464266 57464414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57468418 57468529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57472354 57472525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57488585 57488652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGTTGTTCCTGAGGCAGGCTTTAAGATGGGTCTCAGTGGTCGCCGTGTGGAAACCAAACTCTGCCCTG
GCCTTCACGGGCTGAAGTGGTGGCTGTTGCTGTGTTTCTTGGCCACTACCTGTGATGCTTTCTTCTTCCC
GGGACTGGTTCCTGTCACCTACTGTGAGGAGGGTCATCCCAACTCCTATTGTAAGTCCTCAATTCAGGTG
TATGCTGATAAATTATACTCAGTGGACAGTGTGATGTTCTATGATTATGATAGCTTTGACTTCTGTCAAG
ATTCACTGAAGAGAACACCCTCTGAGACTCTTGGACAAATTCTATTTGGAGAACAAGTAACATCATGTCC
CTACAAGTTTTCTTTTAACAAAGACGAAACATGTAGAAAAGTCTGTGTAAAATCTTATGCTCCAGACAAT
GAAGATGATATGAACAAGTTGGCCTTTTTGAAGAAAGGGATAAAACAGGATTACCGTCATCACTGGATTG
TTGATAACACAGGAATAATATGGTGTTATGACACTGAAAATGAAGAACACCATTGCATGTCAGGATTTCC
AATAGGATGTTTTAATGCCCCAAGTGACCAAGTGAAAGGTTCTTGCTTGATTAATCCCGAATTCAACAAA
AATAATAGTTTGTACCTCTTCAACCACCTTGACATTACTATTACATATCACATAGAAAGTGATACAACTG
TCAAGGTTGCAAAACTGATTAGTTCCAGAGTCGATCCCAAAAGCTATAAACATTTAGATGAAGACCACCT
GACTTGCAACGAGCCCCCTATGGAAATTCCTGAAGAAGATACAGAGAATTTAAATGTGATCTACACATAT
TCTGTGAAATTTGAGGAGAGTAAAGCTACTGAGTGGTCCTCGGAAGGGGATTATGATTTGGACAGTACCG
CCGAGACCAGCCTTCAGTGGATTAGGCTTGTCAACTCCTTTTTTGTGGTACTTTTCTTGTGTGGACTGGT
GGTTATCCTCCTCTTAAGGAGTATCTGGAGAGACATTGCCAAATTTAACCGTATAAAAATTTCTGTATAT
GACCGGAGGCTGTTTGGTTGGAGGTTGATTCATGGGAATCTATTCAGGCTCCCAGAGCATGGCATGTTGC
TGTCCATCCTTCTTGGTCAAGGAACACAAGTTTTCATAATGACATTTCTGTCTTTATTTTTGGCTGGCCT
TGGCTTTCTTACTCCTGCTGATCAAAATGTTTTAGTGAACTATGGTGTTGTGCTGTGGCTCGCACTGGAA
ATCCCTGCTGGATACATGTCTGCCAAAATGTACAAGACATTTAAAGGTATAAACTGGAAGATGCATTTTT
TGCTGACAACAGTGTTATTTCCTGGAATTGTCTTTGCTGATATCTTTATTATGAATCTGATTCTATGGAT
GGATGGCTCACCAGCTGCTATCTCCTTTTGTACACTGGCAAGCCTCTTTGCACTGTACTTTGGAGTTTCA
ACACCACTGACGTTTTTAGGAGTGTACTTTGGGAAAAGGGAAAAGTTTGAGTTTCCAGTTTATGCACCAA
AACATGAGCATGGGAGTCCCCAAAGGACTTTCTTTCCAAAATCAACTATTACCATTATACTTGGTAGTCT
TTTACCCTTTGGCTGTATTTTTCTGCAACTTTCTTATATTCTAAACCGTATTTGGTCTCCTCATATGTAC
TACCTGTTTGCCTTCCTTCTCTTACTCTTCTTAATTTTTATGATTTCCTGTTCAGAAGTTACAGTTCTGC
TATGCTATTTTCGGCTGTGCGCTGAGGATCGTGGTTGGTGGTGGAGAGCCTTTTTGACCAGCAGTTTTAC
ATCTGCTTATATTTTTATATATGTAATTCATTACTTTTTTACCAAACTTCAAGTCACTAGCATTGGAAGT
ACTTTTATGTACTTTGGGTATGCATTTATCCTAGTGCTAGCTTTCTTTCTTTTCACAGGGACAATTGGAT
TTTTTTCTTGCTTCTTCTTTGTTACTACAATCTACGGTGTGATAAAAGAGGATTAA

Translation (671 aa):
MVVPEAGFKMGLSGRRVETKLCPGLHGLKWWLLLCFLATTCDAFFFPGLVPVTYCEEGHPNSYCKSSIQV
YADKLYSVDSVMFYDYDSFDFCQDSLKRTPSETLGQILFGEQVTSCPYKFSFNKDETCRKVCVKSYAPDN
EDDMNKLAFLKKGIKQDYRHHWIVDNTGIIWCYDTENEEHHCMSGFPIGCFNAPSDQVKGSCLINPEFNK
NNSLYLFNHLDITITYHIESDTTVKVAKLISSRVDPKSYKHLDEDHLTCNEPPMEIPEEDTENLNVIYTY
SVKFEESKATEWSSEGDYDLDSTAETSLQWIRLVNSFFVVLFLCGLVVILLLRSIWRDIAKFNRIKISVY
DRRLFGWRLIHGNLFRLPEHGMLLSILLGQGTQVFIMTFLSLFLAGLGFLTPADQNVLVNYGVVLWLALE
IPAGYMSAKMYKTFKGINWKMHFLLTTVLFPGIVFADIFIMNLILWMDGSPAAISFCTLASLFALYFGVS
TPLTFLGVYFGKREKFEFPVYAPKHEHGSPQRTFFPKSTITIILGSLLPFGCIFLQLSYILNRIWSPHMY
YLFAFLLLLFLIFMISCSEVTVLLCYFRLCAEDRGWWWRAFLTSSFTSAYIFIYVIHYFFTKLQVTSIGS
TFMYFGYAFILVLAFFLFTGTIGFFSCFFFVTTIYGVIKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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