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Report for CCDS43714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43714.1 Public Homo sapiens 8 DEFB130A 24 110 108 CCDS HistoryNCBI Gene:245940Re-query CCDS DB by CCDS ID:43714.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43714.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400079.1 ENSP00000382951.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400079.1Link to Ensembl Protein Viewer:ENSP00000382951.1Re-query CCDS DB by Nucleotide ID:ENST00000400079Re-query CCDS DB by Protein ID:ENSP00000382951
Original member Current member NCBI NM_001037804.1 NP_001032893.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037804.1Link to Protein Sequence:NP_001032893.1Re-query CCDS DB by Nucleotide ID:NM_001037804Re-query CCDS DB by Protein ID:NP_001032893Link to BLAST:NP_001032893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032893.1 79 P0DP74 79 100% 0 0

Chromosomal Locations for CCDS 43714.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12310962 12311143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12318259 12318316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGAAACTCCATTCCCTTATTTCTGTTCTCCTCCTCTTTGTGACTTTAATACCAAAAGGAAAGACTGGCG
TTATTCCAGGACAAAAACAGTGTATTGCTTTGAAAGGGGTGTGCAGAGACAAACTATGCAGCACACTAGA
TGATACCATTGGTATATGTAATGAAGGAAAAAAATGTTGTAGAAGGTGGTGGATACTTGAGCCCTATCCA
ACTCCGGTTCCCAAAGGAAAATCTCCTTAG

Translation (79 aa):
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCCRRWWILEPYP
TPVPKGKSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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