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Report for CCDS29390.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29390.1 |
Public |
Mus musculus |
18 |
Rttn |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:246102](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:29390.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29390.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000023828.8 |
ENSMUSP00000023828.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000023828.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000023828.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000023828](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000023828](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_175542.3 |
NP_780751.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_175542.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_780751.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_175542](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_780751](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_780751.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_780751.2 |
2226 |
Q8R4Y8-1 |
2226 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 29390.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6681 nt): ATGGTTCTGGCGGGGCTCATCAGGAAGCTCGGCCATCAGCTGGCGGAGATCAGGGAACGCGCCCTCAAAA GTATCCTGTGCAAGATTGAGCACAACTTGATCTGCTATGCTGACTTGATTCAGGAAAGGTTGCTTTTTCT CCATTTGCTCGAATGGTTCAATTTCCCATCTGTCCCAATGAAAGAGGAGGTTCTGAACTTGTTAAGCAGA TTGGTTAAGTATTCTCCAGCCGTCCAACACTTGATTGACCTTGGTGCAGTAGAGTTTTTATCTAAGCTCC GTCCAAATGTGGAGCCAGTAATACAGGCTGAGATTGATGGCATTCTCGATGGACTTTTCATTCTTCCTTC AGAAGTTCCTGCACTGTGTTCTTCCAGTTACCACACTGATCAAATTGAATTGTCACAACAACCTGAAGTC TTAACAGGATATTTTCCCCAAGACAAAAGTAATTTCCAGCAGATGGAAGTACCACCAGGGCCAGCGGGAA ACCAGGCTGTGAAGTGGCTGAGGTTCTCTGTGTTTCCTTGGCTACCCCTGACCACAACAGACAGACATGT TCTCTCTTCCAATGAAAGCTCTTTGAGAAGTAGTAACCACACTCTGATCTGGAACACCTGTGAGCTTCTG AAGGACGTGATCATGCAAGACTTTCCTGCTGAGATTTTTCTTCAGAGGCCAAAGATTGTTCAGGGCCTTT TGTGTCTGGTGAAGCTGGCCTTCGGAGGAGATGGGAAGCATCGTCTAGCATTACAGTCAGTGTCCTGTTT GCAGCAGCTGTGCACAAGCTTAAGAAACAGACTCAACTTTTACAGAGACCCCAACTTTTTCTCCAGTAGA CAAGACACAGTCTCCCAGAATTCTTCTTTGTCTTACTGTCATGAAGCAAGAGGTCCTTACCATTCCCCAA ACCCATCCCCGGGAAGCAGTAGCTCTCGGCCTTCTGTGGTTGGGCGCACAGGCCAGCGACCCCGAGGAGA TGGTCAGGACTGGGATGCAGTGTCTTCCAGTGGAAGTAGTAGTCACACGCATGTGAACTCTAGGATATCT GTGCATTCTCCTTTGGACGTGGCACCCGTGGATCTGCCGGAGCTGGAAGCAGAGGACACACTGGAGCTGC AGTTCCAACAGCTTAGTCTTCCTCAGTTCTGCATCTCCACCCTGGAGGCAGCAGCTCCTCTGCTGAGAAC AGGCAGCAGAGAAATGATAATAAGAGTTCTGGAACTGCTTGCAGAGGACATGCTGCTCATTGGACAAGCA ATTTCATCAGAAATCTGGGATGATAACAGCCTTTTTGCTATCAATGTGAAAGAGAAACTGCTCCAAGTGT TGGGGTCCCTTGGAGAAACCATGTGCTACCGTAAAACCAGTTTTAGCATGGAGCAAGCCGAGGCTGTACT CGTGCACCACAGAATGGCCTTTGTCAGCATCTCACTGTTCACAGTTCGACTGTTGCAACTTCTTCTCCCT GTTGAAAAGGCGAGTGAGTTTTTGCCAGAGTCCATGTCAGCAGCATTATTTTTTGTCTCCTTGGACATGC CTATTTCTTTGGAATATCCAGAGATTCATGACACAGTTGTGGCTTATTTGGAACAGCTGGATTCTGAAAA TTACAGCATTTATAAGCGAACTGCAGAGGCTGTTTATTCAATTGAATGCACCTGTAACTTCCTATCTGAT GTGGGGAAAGAGGGAGAAAAGAATCTTCTAGAATTAGTGGAGCTGGCAGACCAAGCCTTGCGTAGCTTTT CCTATCATCAGCATTCTCCCCTAATAAAGGAAATCATCTGCATCTGTTCAAAGATCTGGAAATCTGCACA GGCTAGTCCATTACTCCAGGGAGAGAGTCAGAAGGTGTTTCTCCATATGCTGTCTCACCCATTGCCACAG GTGAAGGTGGAGACTTACCAGTGCTGCCTGGAGATTGTAAAGGAATGTTTAGGTGTCCAAAATGTCACTA AACCTGTGTCTTCACTTTGTAGTGGAATTCATTTTCTGCTTCATCCAAAAGTTCTGTATGAAATCTCTGC ATTTGGTATTCAAGAATCCAAAAATGAGGTGAATGCTGCTGCCAAGGCCATTCTGCTGTATCTGCTTCAG GGACGATTGATGATGACAGCTCTGACCTGGAACAAGTTTATCGAATCTCTCGCTCCTGTCATTCCAGTGC TACAGGGCTACGCTGATACAGAAGATCCCTTAGGCAACTGCATTCTCCTTCTAAGCAAAGTGAGCTCTGA GGCAGGAGAAGGCGCTCTCCCCTGCACTGCCCGGCTGAAGTCTGTGCTACGGCTTTTGCTAGTAAAAAAA CCTTCGGTTCGTTCACTAGCATTAAAACTTTTAGCATTTCATCTTACCAGTGAAGAAGGGGCTGATAAAA AGCGCCCGTTCATAGATGCTGGCGTTCTCTCCAGAGTTACTAATCTGTTTATTGTGAAAAAACCTATTGA CCTTAAGTTGGATGACAGAAGAGAACTAGTTATTAAGTTGGAGACTGTTAAAAAGGTGTGTGACATATTC ACCTCAGACGATGTTGATCTTGTTTTAAGAAAGTCAGCTGCAGAGCAACTAGCTGTGATAATGCAAGATA TTAAAATGCATACAGTGGTGAAAAAGTTATGCTTAGTTGAGAAGATTATTGGACATTTAAATGAATTTGT GGGTCAAGATGGTGAGGTTATAGAATGCTTGATTCAGCCATGCCTCACACTCCTGAGGAAGGTTTTGTAC GCTGACCCGGTTATCCGTGTTTCCTTGTCACAGCAGGCCTCTCTCTTGACCCTATTACTCAGAGTTTCCT TGATATTTCATGAAGATTGTACTGTGGTGGCTGAAGTCGGGGCATTGTTTTGTCTTCTATTGTTCGATGA AGTATCAAGAATGGATACATGGTCTGATACTCTTTCTGATAAGCCTTCTTTGTCATCAGTCTTCAGTTTG CCGGTTTCAGTCTTTAGAAGGTATCATCTACCAGTTCATGTGACTGGCCACCATGCTGTGAGTCCTTACT CAATAGTTTTGCCATTACCTACTGAATGTTTGACCCTGAAGCCGGTGTCAGATATGCTGAGAATAGCTTG GAACCTGGCATGGTATCATGGGAGTGATAATCTATTGAAACAAATGACCTCTGAAGCTAAAATTCAGGAA TTTTTAGATACACTGCAGCTGTCCACAGAAGATATCCTTGCACTGAAGATCACATACACGGATAGTGGGT TGAAGGACTGCCTTCAGTCCATCATTCAGGCTGGAGGCCACAGGGATGTGAGGGCTGCTATCACCAGGAT GAGTTTTTATCTTTTGAATGACAAACTGTCTTTGAAGGATGATATTGGTCCATGTGGCGTTACTTTAAAA TCCTTGGCTTGGCACACTGTGCTGAACAGGTTTTTACAAGTACTTCCTGCTTGCACTGAAGATGAGAAAC TGCTAATAGATATCATACATTTTTTGAATAAGTTAATAAAGGAACAAAGAAAAAACCCATCAATTGAACT TTTAAACTGGATTCTGGAATTACTTCTTAGGCATAATCCAAGTCCACTACTAGACCTGCTGGTTCTGACA GATTCACATGCAGGAGAAGAAACAGATGACGTCCGGACTGCTGTCAGACAGCAACTCCAGAAAGAACTGA TCAGTCTTCTCAATTCCTTGTTACTGGTTTTTATGACAGTCTCTGACAGGAAATGCTTGGAACTGTTTTA CGTTTTCCAAACACAGCTGTCTCTGAAGCTACTCCAGTGCCTCAGAGTCACAGATGCTCCCCATTTCTAT GGCTTACCTTCATTGGAGAGGACCTTAGCAGGGATGGCTCACCTCACTGCCTTCCCTGGGTGGAGTGCAC ACTCTCCTCTTTCAAAGCCACTTGAGATTTGTGGGAAGTACTTGTCCGGTCTCCTGGAGGTCATTACTTC CTTTTATGTTGAACGGGGAGGAAATGCTATGTCCTTCATGGGGAAAGGCGTTACAAAGAGCACAGGTCTT TGCTTACTTCACTTATCCCATGAGATGATAGTCCAGGCACCAGGCTCGGAGTGGATGCCGCTTTGGTTCT TGCCTTTGGGTAGTCACAGTGAAGAACATGCCCCTACTCAGCAAGGATTGGCCTGGCTAATTCCCTTATG GGTTGATAGAGACCCAGAGGTGAGATTCACTTCACTGGGGTTGGGATCAGCACTGACTACTATTGAAGCT GGCTGTGTGGCCTTGGCAAACAGTTGTCAGAATATTTCTGGTGGGCTCTGGGGAACCGTGGTGAACATTC TTCTGGATCAATCAGAATGCAGTCTGGTGCGCCGGGAGGCTGCATTTATTCTTCAGAATCTCCTTGTAAT TCCAATGCCTTCAGAAATTATAAAGGATTATACTTGGCAGGGCCCCTGTGTCCATGATGAGGATTCTGGC CTGTCACTTTCAGGAAAACCTGCCCTTCAGGCTCTTTTATATCACTGTCGTTTCTATGAACATTTGACTC ACATGGTGAAACATTGTTATGTAGGAAGATATATCTTTGATTTTAATTTTTCTGCTTTTACTGAAACTTC AGAATACAGTGATTTAAATGGTTTAGACGACTCATTCAAGTTTTGGAGGGCCCCTTCTGGGACATCTACT CAGGATCATGAGCCAAGCTCTCTTTCCACCTCAGAAACAATGGTGGCTGCCTCGGTGGTCAGTTCTGAGA TTCAGCCCCTGCTGCCGTCAACACTTCTTCCTGAAACTGCCCTTGACCAGTTTGTGACGCAAGGTCAACG TGAAATGAGACCAGTGCGACCTCGTGACTCATTGCTGTCTACTTCCCTGAACAGGCAGTATGTGTTTGTT ACTCCGTCTCTGCTGTCAGCAGTCTGTAGCCTTTTAGACAACCTCTTGGCAGTTACTCCAAGAGATGCTG CAAATGCTTTTCAACAAGCTCATCTCATAGAACTCCTCTGTAGCACGGTGGATGCTTCCCTCATAGAAAT GTGCATCCAAGAACTCAAGACCCCACTGCCTTTACCATCTGCTGTTGAACATATTCAGGCTCAGGCTTCC TTTTTCTTGGAATACCTATCCTCTTTGTCCCAGCTCTTGAAGTCCTGTCTGTTGGTAGAGCCTAAACTTG TGACACAAGATGAGCTCTTGAAACCTCTTATCACTAATGTCATCCGAGTTCTCATTGTGTGTCCCAAAGA TGTATTAGATGTACAGTTAGTGTTGGCTTTTTACCGCACATGGACGCATTTATTTGACCTTCTGGCCACA CTACTGAGGAAAGCTGGTGCTGTCTCCCTTGTTCCTCTTACCTCAGCTCTTGCCAAGCATTGGGAGGCAG TGACTGATACACTGTGTAGATGTGTGGGCCTCTCATTCAAGTGCCCTGCCCTGACTATTGCCAGCCTCCA GTTCCTGTCTGTTCTCTTGGCTGAGGAAGAAAAGAGGCGTGTCCAGGACAAGGACAAAACAAATGAGGGC CAGGCCCCAACAGTGGCCTTACTTCTTGATGGAACTCAGGGAAGCCTTAGCTCTTCAGAGCGACTTAATG AAACAATTCTTCAGTGCTATGAAGGAATATCCCCCAAAGATGTCCTGAAAAGAGTTGCTGCAAATGCCCT GTTGTCACTTCTGGCTGTTAGCAGAAGAGCGCAGAGGCATGCTTTGAGATCTGATCTCATAGAAAACTGT ATGGAGCAGATGAAGCACATCAATGCACAACTGAACTTAGATTTGCTGAGACCTGGGAAAGCAGTACTGA AAAAAAAGGAGGATGGCTTCATTAAAGAATTAAGCATCACCATGCAGCTCCTAAGAAACTGCCTTTATCA AAATGAAGAATGTAAAGTGGCAGCTCTTGAAGCACGTCTTGTGCCTGTATTGCACTCTCTCTGGCCTTGG CTTTTGATGGAAGATTCATTGATGCAAATTGCCTTGCAGTTGCTTTGTGTCTATACTGCAAATTTTCCAG CTGGCTGCAGTTCCCTTTGTTGGTCAAATTATGGACAGTGTATTCAAACTGCACACAGAGGCACCCCCAG TAGCTCCCTGATACTGTGTATCCTGAAACTGGCTTCTCAGATGCCTGCAGAGAACACCACCATTCAGCAG TTGGTTTTTATGTTTCTTTCAAACTTGGCCTTATCTCATGACTGCAAGGGAGTAATTCAAAAGAGCAACT TTCTACAGCACTTCTTGTCCCTGACATTGCCTAAAGGAGGAAACCAACATCTCAGCACTGTGGCCATTCT GTGGTTGAAGTTGCTCCTGAATATGTCATTTGGAGAAGATGGACAGCAAATGATCCTGAGGCTAGATGGC TGCTTAGACTTACTCATAGAGATGAGCAAGTACAAGCACAAGAGCAGCCCTCACATGCCTCTGCTGATCT TTCATAACATTTGCTTCAGTCCTGCTAATAAGCCTAAAATCCTGGCTAATGAAAAAGTTGTTACTCTTCT GGCTGCCTGTTTAGAAAGTGAGAATCAAACTGCCCAGAGGATTGGAGCAGCTTCACTTTGGGCTCTAACT TACAATTACCAAAAGGCAAAAGCAACTTTGAAAAATCCATCAATAAAAAGAAAAGTAGATGAAGCATATT CCATAGCAAAGAGAACTCTCTCAAACTCAGAAGAAAACCCTCTGAATTCCTACTATTTGAAATGCCTTGA AAATCTAGTACAACTGCTTAACTATTCCTGA
Translation (2226 aa): MVLAGLIRKLGHQLAEIRERALKSILCKIEHNLICYADLIQERLLFLHLLEWFNFPSVPMKEEVLNLLSR LVKYSPAVQHLIDLGAVEFLSKLRPNVEPVIQAEIDGILDGLFILPSEVPALCSSSYHTDQIELSQQPEV LTGYFPQDKSNFQQMEVPPGPAGNQAVKWLRFSVFPWLPLTTTDRHVLSSNESSLRSSNHTLIWNTCELL KDVIMQDFPAEIFLQRPKIVQGLLCLVKLAFGGDGKHRLALQSVSCLQQLCTSLRNRLNFYRDPNFFSSR QDTVSQNSSLSYCHEARGPYHSPNPSPGSSSSRPSVVGRTGQRPRGDGQDWDAVSSSGSSSHTHVNSRIS VHSPLDVAPVDLPELEAEDTLELQFQQLSLPQFCISTLEAAAPLLRTGSREMIIRVLELLAEDMLLIGQA ISSEIWDDNSLFAINVKEKLLQVLGSLGETMCYRKTSFSMEQAEAVLVHHRMAFVSISLFTVRLLQLLLP VEKASEFLPESMSAALFFVSLDMPISLEYPEIHDTVVAYLEQLDSENYSIYKRTAEAVYSIECTCNFLSD VGKEGEKNLLELVELADQALRSFSYHQHSPLIKEIICICSKIWKSAQASPLLQGESQKVFLHMLSHPLPQ VKVETYQCCLEIVKECLGVQNVTKPVSSLCSGIHFLLHPKVLYEISAFGIQESKNEVNAAAKAILLYLLQ GRLMMTALTWNKFIESLAPVIPVLQGYADTEDPLGNCILLLSKVSSEAGEGALPCTARLKSVLRLLLVKK PSVRSLALKLLAFHLTSEEGADKKRPFIDAGVLSRVTNLFIVKKPIDLKLDDRRELVIKLETVKKVCDIF TSDDVDLVLRKSAAEQLAVIMQDIKMHTVVKKLCLVEKIIGHLNEFVGQDGEVIECLIQPCLTLLRKVLY ADPVIRVSLSQQASLLTLLLRVSLIFHEDCTVVAEVGALFCLLLFDEVSRMDTWSDTLSDKPSLSSVFSL PVSVFRRYHLPVHVTGHHAVSPYSIVLPLPTECLTLKPVSDMLRIAWNLAWYHGSDNLLKQMTSEAKIQE FLDTLQLSTEDILALKITYTDSGLKDCLQSIIQAGGHRDVRAAITRMSFYLLNDKLSLKDDIGPCGVTLK SLAWHTVLNRFLQVLPACTEDEKLLIDIIHFLNKLIKEQRKNPSIELLNWILELLLRHNPSPLLDLLVLT DSHAGEETDDVRTAVRQQLQKELISLLNSLLLVFMTVSDRKCLELFYVFQTQLSLKLLQCLRVTDAPHFY GLPSLERTLAGMAHLTAFPGWSAHSPLSKPLEICGKYLSGLLEVITSFYVERGGNAMSFMGKGVTKSTGL CLLHLSHEMIVQAPGSEWMPLWFLPLGSHSEEHAPTQQGLAWLIPLWVDRDPEVRFTSLGLGSALTTIEA GCVALANSCQNISGGLWGTVVNILLDQSECSLVRREAAFILQNLLVIPMPSEIIKDYTWQGPCVHDEDSG LSLSGKPALQALLYHCRFYEHLTHMVKHCYVGRYIFDFNFSAFTETSEYSDLNGLDDSFKFWRAPSGTST QDHEPSSLSTSETMVAASVVSSEIQPLLPSTLLPETALDQFVTQGQREMRPVRPRDSLLSTSLNRQYVFV TPSLLSAVCSLLDNLLAVTPRDAANAFQQAHLIELLCSTVDASLIEMCIQELKTPLPLPSAVEHIQAQAS FFLEYLSSLSQLLKSCLLVEPKLVTQDELLKPLITNVIRVLIVCPKDVLDVQLVLAFYRTWTHLFDLLAT LLRKAGAVSLVPLTSALAKHWEAVTDTLCRCVGLSFKCPALTIASLQFLSVLLAEEEKRRVQDKDKTNEG QAPTVALLLDGTQGSLSSSERLNETILQCYEGISPKDVLKRVAANALLSLLAVSRRAQRHALRSDLIENC MEQMKHINAQLNLDLLRPGKAVLKKKEDGFIKELSITMQLLRNCLYQNEECKVAALEARLVPVLHSLWPW LLMEDSLMQIALQLLCVYTANFPAGCSSLCWSNYGQCIQTAHRGTPSSSLILCILKLASQMPAENTTIQQ LVFMFLSNLALSHDCKGVIQKSNFLQHFLSLTLPKGGNQHLSTVAILWLKLLLNMSFGEDGQQMILRLDG CLDLLIEMSKYKHKSSPHMPLLIFHNICFSPANKPKILANEKVVTLLAACLESENQTAQRIGAASLWALT YNYQKAKATLKNPSIKRKVDEAYSIAKRTLSNSEENPLNSYYLKCLENLVQLLNYS
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