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Report for CCDS24421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24421.1 Public Mus musculus 11 Myo1g 23 108 98 CCDS HistoryNCBI Gene:246177Re-query CCDS DB by CCDS ID:24421.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003459.3 ENSMUSP00000003459.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003459.3Link to Ensembl Protein Viewer:ENSMUSP00000003459.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000003459Re-query CCDS DB by Protein ID:ENSMUSP00000003459
Original member Current member NCBI NM_178440.4 NP_848534.2 Accepted alive Link to Nucleotide Sequence:NM_178440.4Link to Protein Sequence:NP_848534.2Re-query CCDS DB by Nucleotide ID:NM_178440Re-query CCDS DB by Protein ID:NP_848534Link to BLAST:NP_848534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848534.2 1024 Q5SUA5 1024 100% 0 0

Chromosomal Locations for CCDS 24421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6506676 6506832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6506907 6507061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6507869 6507982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6508190 6508294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6509325 6509469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6510148 6510371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6510868 6511075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6511483 6511649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6512161 6512293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6512463 6512537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6514467 6514537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6514752 6514922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6515094 6515208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6515849 6515994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6516079 6516303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6516748 6516864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6517087 6517197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6517570 6517623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6517852 6518017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6518734 6518827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6518979 6519187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6520742 6520854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGCTTGCAGTGGGCAGGATGGAGGACGAAGAAGGCCCTGAGTATGGGAAACCAGACTTCGTGCTTTTGG
ATCAACTGACCATGGAGGACTTCATGAAGAACCTAGAGCTCAGGTTTGAGAAGGGCCGTATCTATACCTA
CATTGGTGAGGTGCTCGTATCCGTGAACCCCTACCAGGAACTGCCATTGTATGGGCCAGAGGCCATTGCC
AAGTACCAGGGCCGCGAGCTCTATGAGCGACCACCTCATCTTTACGCCGTGGCCAATGCTGCTTACAAGG
CAATGAAGCGCAGATCCAGGGACACCTGCATCGTCATCTCAGGGGAGAGTGGGGCAGGGAAGACAGAAGC
CAGCAAGCACATCATGCAGTACATTGCTGCTGTCACCAACCCAAGCCAGAGGGCTGAGGTGGAGAGGGTG
AAGAATGTGCTCCTCAAGTCCACCTGTGTGCTCGAAGCCTTTGGCAATGCCCGCACCAATCGCAACCACA
ACTCCAGCCGCTTTGGCAAGTACATGGACATCAACTTCGACTTCAAGGGGGATCCTGTTGGTGGACACAT
CCACAGCTACCTGCTGGAGAAGTCTAGGGTTCTCAAGCAACATGTAGGTGAGAGGAACTTCCATGCCTTC
TACCAGTTGCTTCGAGGCAGTGAGGACCAAGAGCTGCAAGGACTGCATCTGGAAAGAAATCCTGCTGTGT
ATAATTTCACGCGTCAGGGAGCTGGGCTCAACATGGGTGTGCACAATGCCTTGGACAGTGATGAGAAGAG
CCACCAAGGAGTGATGGAGGCCATGAGGATCATCGGCTTCAGTCCTGACGAGGTGGAGTCCATCCATCGC
ATCCTTGCCGCCATATTACACCTGGGAAACATCGAGTTTGTGGAGACAGAGGAAAATGGACCACAGAAAG
GAGGCCTGGAAGTGGCTGATGAGGCCCTGGTAGGATATGTGGCCAAGCTGACAGCCACTCCCAGAGACCT
TGTTCTGCGAACCCTGCTGGCTCGAACAGTGGCTTCAGGAGGCCGAGAAGTCATTGAGAAGAGCCACACC
GTGGCTGAGGCCAGCTATGCCCGGGATGCCTGTGCAAAGGCGATGTACCAGCGACTGTTTGAGTGGGTTG
TGAACAAGATCAATAGCATCATGGAACCCCGAAACCGAGACCCTCGGTGTGATGGCAAGGATACTGTCAT
TGGGGTGCTGGACATTTACGGCTTTGAGGTGTTCCCTGTCAACAGCTTTGAGCAGTTCTGCATCAACTAC
TGCAACGAGAAGCTGCAGCAGCTCTTTATCCAGCTTATCCTGAAGCAAGAGCAGGAGGAGTATGAGCGAG
AGGGCATCGCCTGGCAGACCATCGAGTACTTCAACAACGCTACCATTGTGGAACTTGTAGAGCAGCCCCA
CAGAGGCATCCTGGCTGTGTTAGATGAAGCCTGCAGCACGGCAGGCCCCATCACTGACCGAATCTTCCTG
CAGACCCTGGACACACACCACCGCCACCACCCACACTATTCCAGCCGCCAGCTTTGCCCTACGGACAAGA
CCATGGAGTTTGGCCGAGACTTCCAGATCAAACACTATGCAGGCGATGTCACGTACTCTGTGGAAGGCTT
CATTGACAAGAATAGAGACTCTCTCTTCCAGGACTTCAAACGGCTGCTGTACAATAGTGTGGATCCCACC
TTGCGAGCCATGTGGCCTGACGGGCAACAGGACATCACGGAAGTGACCAAGCGTCCCCTGACAGCCGGCA
CACTCTTTAAGAATTCCATGGTTGCCCTGGTGGAAAACTTGGCTTCCAAGGAACCCTTCTATGTCCGCTG
CATCAAACCCAACGAAGACAAGGTGGCTGGGCGGCTCGATGAAGCCCACTGTCGTCACCAGGTCGAATAC
CTGGGACTATTGGAGAATGTGAGGGTCCGCAGGGCTGGCTTTGCTTCCCGGCAGCCCTACCCTCGATTCC
TGCTCAGGTACAAGATGACCTGTGAGTACACGTGGCCCAACCACCTGCTGGGCTCTGACCGGGATGCGGT
GAGCGCCCTGCTGGAACAGCATGGGCTGCAAGGGGATGTGGCCTTTGGCCACAGCAAGCTGTTCATCCGA
TCCCCAAGGACGCTGGTCACTCTGGAGCAGAGCCGAGCTCGCCTGATTCCCATCATTGTGTTATTGCTGC
AGAAGGCTTGGCGGGGCACCCTGGCTAGGTGGCACTGCCGGCGACTAAGGGCCATCTACACCATCATGCG
CTGGTTCCGGAGGCACAAGGTGCGTGCTCACCTGATTGAACTACAGCGCCGGTTCCAGGCTGCACGGCAG
CCCCCACTCTATGGCCGTGACCTTGTGTGGCCCACACCTCCTGCTGTGCTGCAGCCCTTCCAGGACACTT
GCCGTGTTCTCTTCAGCAGGTGGCGGGCACGGCAGTTAGTGAAGAACATCCCTCCTTCAGACATGATCCA
GATCAAGGCCAAGGTGGCTGCTATGGGGGCCTTGCAAGGATTGCGGCAGGACTGGGGTTGCCAGCGGGCC
TGGGCCCGAGACTACCTGTCCTCTGACACTGACAACCCCACAGCTTCCCATCTGTTTGCTGAGCAACTAA
AGGCACTTCGGGAGAAAGATGGCTTTGGCTCTGTGCTTTTCTCCAGCCATGTGCGCAAGGTGAATCGCTT
CCGCAAGAGCCGGGACCGGGCCCTTCTGCTCACAGATCGGTATCTGTACAAGCTGGAGCCTGGACGACAG
TACCGGGTGATGCGGGCTGTGCCTCTGGAGGCGGTGACAGGGCTGAGTGTGACCAGTGGAAGAGATCAGC
TGGTGGTGTTACATGCCCAAGGCTATGATGATCTTGTAGTGTGTCTACACCGTTCCCAACCACCACTGGA
CAATCGAATTGGGGAGCTGGTGGGCATGCTGGCTGCACACTGCCAGGGAGAGGGACGAACTCTGGAGGTC
CGTGTCTCTGACTGCATCCCACTGAGCCAGCGTGGTGCCCGGCGCCTCATTTCTGTGGAGCCCAGGCCAG
AGCAGCCTGAGCCAGATTTCCAAAGCAGCCGTAGCACCTTTACCCTCCTCTGGCCAAGCCACTGA

Translation (1024 aa):
MLAVGRMEDEEGPEYGKPDFVLLDQLTMEDFMKNLELRFEKGRIYTYIGEVLVSVNPYQELPLYGPEAIA
KYQGRELYERPPHLYAVANAAYKAMKRRSRDTCIVISGESGAGKTEASKHIMQYIAAVTNPSQRAEVERV
KNVLLKSTCVLEAFGNARTNRNHNSSRFGKYMDINFDFKGDPVGGHIHSYLLEKSRVLKQHVGERNFHAF
YQLLRGSEDQELQGLHLERNPAVYNFTRQGAGLNMGVHNALDSDEKSHQGVMEAMRIIGFSPDEVESIHR
ILAAILHLGNIEFVETEENGPQKGGLEVADEALVGYVAKLTATPRDLVLRTLLARTVASGGREVIEKSHT
VAEASYARDACAKAMYQRLFEWVVNKINSIMEPRNRDPRCDGKDTVIGVLDIYGFEVFPVNSFEQFCINY
CNEKLQQLFIQLILKQEQEEYEREGIAWQTIEYFNNATIVELVEQPHRGILAVLDEACSTAGPITDRIFL
QTLDTHHRHHPHYSSRQLCPTDKTMEFGRDFQIKHYAGDVTYSVEGFIDKNRDSLFQDFKRLLYNSVDPT
LRAMWPDGQQDITEVTKRPLTAGTLFKNSMVALVENLASKEPFYVRCIKPNEDKVAGRLDEAHCRHQVEY
LGLLENVRVRRAGFASRQPYPRFLLRYKMTCEYTWPNHLLGSDRDAVSALLEQHGLQGDVAFGHSKLFIR
SPRTLVTLEQSRARLIPIIVLLLQKAWRGTLARWHCRRLRAIYTIMRWFRRHKVRAHLIELQRRFQAARQ
PPLYGRDLVWPTPPAVLQPFQDTCRVLFSRWRARQLVKNIPPSDMIQIKAKVAAMGALQGLRQDWGCQRA
WARDYLSSDTDNPTASHLFAEQLKALREKDGFGSVLFSSHVRKVNRFRKSRDRALLLTDRYLYKLEPGRQ
YRVMRAVPLEAVTGLSVTSGRDQLVVLHAQGYDDLVVCLHRSQPPLDNRIGELVGMLAAHCQGEGRTLEV
RVSDCIPLSQRGARRLISVEPRPEQPEPDFQSSRSTFTLLWPSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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