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Report for CCDS18129.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18129.1 |
Public |
Mus musculus |
4 |
Zbtb5 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:230119](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18129.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:230119](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 18129.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000055028.8 |
ENSMUSP00000059919.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000055028.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000059919.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000055028](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000059919](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107817.2 |
ENSMUSP00000103447.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107817.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000103447.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107817](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000103447](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000180217.1 |
ENSMUSP00000136507.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000180217.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000136507.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000180217](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000136507](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001163283.1 |
NP_001156755.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001163283.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001156755.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001163283](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001156755](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001156755.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001163284.1 |
NP_001156756.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001163284.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001156756.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001163284](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001156756](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001156756.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_173399.3 |
NP_775575.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_173399.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_775575.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_173399](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_775575](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_775575.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 18129.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2013 nt): ATGGATTTTCCTGGTCACTTTGAGCAGATCTTTCAGCAGCTGAACTACCAGAGACTTCATGGGCAGCTGT GTGACTGTGTCATTGTAGTGGGGAACAGGCATTTCAAAGCCCACCGCTCCGTGCTGGCAGCATGCAGTAC GCATTTCCGAGCACTGTTCTCGGTGGCGGAAGGAGATCAGACCATGAACATGATCCAGCTAGATAGTGAG GTGGTGACAGCCGAGGCCTTCGCCGCCCTGATTGACATGATGTATACCTCCACCCTCATGCTAGGGGAGA GCAACGTTATGGATGTCTTATTGGCAGCCTCTCACCTGCATCTGAACTCCGTTGTTAAGGCATGTAAACA TTACCTGACGACAAGGACGCTCCCCATGTCTCCCTCTAGTGAGCGTGCTCAGGAGCAGAGTGCCCGCATG CAGCGCTCTTTTATGCTGCAGCAGCTGGGACTCAGCATTGTGAGCTCAGCCCTCAGTTCCAGCCAGAGTG CCGAGGAGCCGACAGCCCCTATGAGCTCATCCATGCGCAGCAGCCTGGACCAGCGGACACCCTTCCCCAT GAGACGCCTTCACAAGCGCAAACAGTCTGTAGAGGAGCGGGCCCGGCAGCGCCTGCGATCCTCCATGGAG GAATCTGCCATTTCAGATGTTACTCCAGAGAGCGGGCCTGCGGGAGTTCATTCCCGGGAGGAATTCTTCT CACCGGATTCTCTGAAAATTGTGGATAATCCTAAACCCGATGGGATGGCTGACAACCAGGAAGACGGTGC CATGATGTTTGATCGGCCTTTTGGTGCCCAAGAAGATGCTCAAGTGCCCAGCCAGTCAGATGGCAGTGCT GGCAACATGGCCTCTCGTGCAACTCAGGTTGAAACGAGTTTTGAACAAGAGGCCGTGGCTGAGAAAGGCA GTTTCCAGTGTGAAAATCCTGAGGTTGGCCTCGGGGAGAAGGAGCACATGAGAGTGGTGGTGAAGTCTGA GCCCCTGAGCTCTCCCGAGCCGCAGGATGAAGTGAGCGACGTGACCTCCCAAGCAGAGGGCAGTGAGTCT GTGGAGGTGGAAGGAGTGGTGGTCAGTGCCGAGAAGATAGACCTCAGCCCTGAAAGCAGTGACCGGAGCT TTTCCGATCCCCAGTCCAGCACCGACAGGGTCGGGGACATCCACATCTTGGAAGTCACGAATAATCTAGA ACATAAGACCTCTTTTAGTATTTCCAATTTTCTCAACAAGAGCAGGGGGAGTAATTTCAGTGCAAGTCAG AGCACTGACGACAACCTCCCAAACACCACCAGTGACTGTAGGCTCGAGGGCGAGGCCCCTTATCTGTTGA GTCCAGAGGCTGGGCCAGCAGGTGGGCCTTCCTCTGCCCCTGGTTCCCATGTAGAGAACCCGTTCAGTGA GCCTGCAGACTCCCACTTCGTCAGACCTATGCAGGAGGTGATGGGCCTGCCCTGTGTGCAGACCTCAGGC TACCAAGGAGAACAATTCGGGATGGATTTTTCCAGGTCTGGCTTGGGTCTCCACTCATCCTTCTCCAGGG CCATGATGGGTTCCCCACGAGGAGGGGCCAGTAACTTTCCATATTACCGACGAATAGCTCCAAAAATGCC AGTGGTAACTTCTGTCAGGAGCTCGCAGATCTCTGAAAATTCAGCCAGTTCCCAGCTAATGATGAACGGG GCCACCTCATTTGAAAATGGCCACACCTCCCAGCCTGGCCCTCCTCAGTTGACCAGGGCATCTGCTGATG TCTTGTCAAAGTGCAAGAAGGCCTTATCGGAGCACAATGTCTTGGTTGTGGAGGGAGCTCGAAAGTATGC CTGCAAAATCTGCTGTAAAACCTTCCTGACTCTGACGGATTGCAAGAAACACATCCGGGTCCACACAGGA GAAAAGCCGTACGCCTGCCTCAAGTGTGGCAAACGGTTCAGTCAGTCCAGCCACCTATATAAACACTCGA AAACGACCTGCCTGCGCTGGCAGAGCAGCAACCTCCCCAGCACCCTGCTCTGA
Translation (670 aa): MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQTMNMIQLDSE VVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLTTRTLPMSPSSERAQEQSARM QRSFMLQQLGLSIVSSALSSSQSAEEPTAPMSSSMRSSLDQRTPFPMRRLHKRKQSVEERARQRLRSSME ESAISDVTPESGPAGVHSREEFFSPDSLKIVDNPKPDGMADNQEDGAMMFDRPFGAQEDAQVPSQSDGSA GNMASRATQVETSFEQEAVAEKGSFQCENPEVGLGEKEHMRVVVKSEPLSSPEPQDEVSDVTSQAEGSES VEVEGVVVSAEKIDLSPESSDRSFSDPQSSTDRVGDIHILEVTNNLEHKTSFSISNFLNKSRGSNFSASQ STDDNLPNTTSDCRLEGEAPYLLSPEAGPAGGPSSAPGSHVENPFSEPADSHFVRPMQEVMGLPCVQTSG YQGEQFGMDFSRSGLGLHSSFSRAMMGSPRGGASNFPYYRRIAPKMPVVTSVRSSQISENSASSQLMMNG ATSFENGHTSQPGPPQLTRASADVLSKCKKALSEHNVLVVEGARKYACKICCKTFLTLTDCKKHIRVHTG EKPYACLKCGKRFSQSSHLYKHSKTTCLRWQSSNLPSTLL
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