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Report for CCDS49665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49665.1 Public Mus musculus 15 Cimip4 23 108 98 CCDS HistoryNCBI Gene:73376Re-query CCDS DB by CCDS ID:49665.1Re-query CCDS DB by GeneID:73376See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074380.13 ENSMUSP00000073984.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074380.13Link to Ensembl Protein Viewer:ENSMUSP00000073984.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000074380Re-query CCDS DB by Protein ID:ENSMUSP00000073984
Original member Current member EBI ENSMUST00000165170.7 ENSMUSP00000133264.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165170.7Link to Ensembl Protein Viewer:ENSMUSP00000133264.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165170Re-query CCDS DB by Protein ID:ENSMUSP00000133264
Original member Current member NCBI NM_001163612.2 NP_001157084.1 Accepted alive Link to Nucleotide Sequence:NM_001163612.2Link to Protein Sequence:NP_001157084.1Re-query CCDS DB by Nucleotide ID:NM_001163612Re-query CCDS DB by Protein ID:NP_001157084Link to BLAST:NP_001157084.1
Original member Current member NCBI NM_028522.1 NP_082798.1 Accepted alive Link to Nucleotide Sequence:NM_028522.1Link to Protein Sequence:NP_082798.1Re-query CCDS DB by Nucleotide ID:NM_028522Re-query CCDS DB by Protein ID:NP_082798Link to BLAST:NP_082798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157084.1 266 Q9D9J2 266 100% 0 0
NP_082798.1 266 Q9D9J2 266 100% 0 0

Chromosomal Locations for CCDS 49665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78378469 78378560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78378744 78378854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78385281 78385425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78386114 78386544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78390143 78390164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGAGCTGAGCCACCGACAAGGTACAACCACGTTGACAAGGACACACCCGAACGACAAGGAGGGCCAGC
AGGACATGAACTCCTTCAGAGCTAACCATAGCTCCTTGGACAACTCCAAATTTAAGTACCATGCAAGGCT
CTCCCAGAGCCCCTTAGGCAGCTCCCTGGGCCAGGGCTACCTGGAGACTCCACCTCTACCACCAACTCCT
ACCTGCAGGACTTCTCTGGCTATGAACTCCCATCCTGAGGACCTGAAGAAGGGGGCATCCAGATCCAGCT
CGAGAGATGCCAGGGAGACCTTCCGAGAGGGATGTGTCGGGGAGGAAGGCCAAGACTCCAGGTCCCCAGA
GCAGAGGACAGTGCCTCTGAGCAAGAAGGACAGCGTCATTCCTGAGAACATCCGCCACAAATTTGGGAGC
AAGATGGTGGACCAACTGATCTCTGAGGATCAGGCTCGACAGGCCATTGGTGAAATGTTTGAGGGCCAGA
AGAGGCCAAGCTCATGGCCTAGCAGGACCCAGAGCCCCATGCAAGCCTCCTCCATTTTCTCAGACTACTA
TGACCTGGGCTACCACATGCGATCCAACTTGTTTCAAGGCCCACCCCAGGAGACAAAGAGCCTCATGAAG
GCTTCCTACACGCCCGAGGTGATAGAGAAGTCGGTGAGGGATGTGGAACACTGGCACGGGAGGAAGACGG
ATGACCTGGGCCGGTGGCACCGGAAGAATGCTATGAACATGAACTTGCAGAAAGCGCTGGAAGAGAAATA
CGGAGAGAAGAGCAGATCCAAGGCCAAGTAG

Translation (266 aa):
MELSHRQGTTTLTRTHPNDKEGQQDMNSFRANHSSLDNSKFKYHARLSQSPLGSSLGQGYLETPPLPPTP
TCRTSLAMNSHPEDLKKGASRSSSRDARETFREGCVGEEGQDSRSPEQRTVPLSKKDSVIPENIRHKFGS
KMVDQLISEDQARQAIGEMFEGQKRPSSWPSRTQSPMQASSIFSDYYDLGYHMRSNLFQGPPQETKSLMK
ASYTPEVIEKSVRDVEHWHGRKTDDLGRWHRKNAMNMNLQKALEEKYGEKSRSKAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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