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Report for CCDS36941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36941.1 Public Mus musculus 14 Tnfrsf19 23 108 98 CCDS HistoryNCBI Gene:29820Re-query CCDS DB by CCDS ID:36941.1Re-query CCDS DB by GeneID:29820See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111234.9 ENSMUSP00000106865.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111234.9Link to Ensembl Protein Viewer:ENSMUSP00000106865.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111234Re-query CCDS DB by Protein ID:ENSMUSP00000106865
Original member Current member EBI ENSMUST00000111236.3 ENSMUSP00000106867.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111236.3Link to Ensembl Protein Viewer:ENSMUSP00000106867.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111236Re-query CCDS DB by Protein ID:ENSMUSP00000106867
Original member Current member NCBI NM_001164155.1 NP_001157627.1 Accepted alive Link to Nucleotide Sequence:NM_001164155.1Link to Protein Sequence:NP_001157627.1Re-query CCDS DB by Nucleotide ID:NM_001164155Re-query CCDS DB by Protein ID:NP_001157627Link to BLAST:NP_001157627.1
Original member Current member NCBI NM_013869.5 NP_038897.4 Accepted alive Link to Nucleotide Sequence:NM_013869.5Link to Protein Sequence:NP_038897.4Re-query CCDS DB by Nucleotide ID:NM_013869Re-query CCDS DB by Protein ID:NP_038897Link to BLAST:NP_038897.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157627.1 416 Q9JLL3-1 416 100% 0 0
NP_038897.4 416 Q9JLL3-1 416 100% 0 0

Chromosomal Locations for CCDS 36941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60966457 60966465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60970829 60971231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60971981 60972083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60973502 60973627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60974590 60974754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60996605 60996690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 61005075 61005253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 61024169 61024279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 61024744 61024812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGCACTCAAGGTCCTACCTCTACACAGGACGGTGCTCTTCGCTGCCATTCTCTTCCTACTCCACCTGG
CATGTAAAGTGAGTTGCGAAACCGGAGATTGCAGGCAGCAGGAATTCAAGGATCGATCTGGAAACTGTGT
CCTCTGCAAACAGTGCGGACCTGGCATGGAGTTGTCCAAGGAATGTGGCTTCGGCTATGGGGAGGATGCA
CAGTGTGTGCCCTGCAGGCCGCACCGGTTCAAGGAAGACTGGGGTTTCCAGAAGTGTAAGCCATGTGCGG
ACTGTGCGCTGGTGAACCGCTTTCAGAGGGCCAACTGCTCACACACCAGTGATGCTGTCTGCGGGGACTG
CCTGCCAGGATTTTACCGGAAGACCAAACTGGTTGGTTTTCAAGACATGGAGTGTGTGCCCTGCGGAGAC
CCACCTCCTCCCTACGAACCACACTGTACCAGCAAGGTGAACCTTGTGAAGATCTCCTCCACCGTCTCCA
GCCCTCGGGACACGGCGCTGGCTGCCGTCATCTGCAGTGCTCTGGCCACGGTGCTGCTCGCCCTGCTCAT
CCTGTGTGTCATCTACTGCAAGAGGCAGTTCATGGAGAAGAAACCCAGCTGGTCTCTGCGGTCACAGGAC
ATTCAGTACAATGGCTCTGAGCTGTCATGCTTTGACCAGCCTCGGCTCCGCCACTGTGCCCATAGAGCAT
GCTGTCAGTATCACCGGGACTCAGCCCCAATGTATGGGCCTGTTCACCTGATTCCGTCCTTGTGCTGTGA
AGAGGCCCGCAGCTCTGCCCGAGCTGTGCTTGGCTGTGGGCTGCGTTCTCCCACTACCCTCCAGGAGAGA
AACCCGGCTTCTGTGGGGGACACGATGCCAGCCTTCTTCGGGTCTGTTTCCCGTTCCATCTGCGCTGAAT
TTTCTGATGCCTGGCCTCTGATGCAGAATCCTCTGGGTGGTGACAGCTCTCTCTGTGACTCTTATCCTGA
ACTCACTGGAGAAGATACCAATTCCCTCAATCCCGAAAACGAAAGCGCAGCATCTCTGGATTCCAGTGGC
GGCCAGGATCTGGCTGGGACAGCTGCTCTAGAGTCTTCTGGGAATGTTTCAGAATCTACTGACTCACCTA
GACATGGTGACACTGGTACAGTCTGGGAGCAGACGCTAGCTCAGGATGCTCAAAGGACTCCAAGCCAAGG
AGGCTGGGAAGACAGGGAAAACCTGAATCTAGCCATGCCCACAGCCTTCCAGGATGCCTGA

Translation (416 aa):
MALKVLPLHRTVLFAAILFLLHLACKVSCETGDCRQQEFKDRSGNCVLCKQCGPGMELSKECGFGYGEDA
QCVPCRPHRFKEDWGFQKCKPCADCALVNRFQRANCSHTSDAVCGDCLPGFYRKTKLVGFQDMECVPCGD
PPPPYEPHCTSKVNLVKISSTVSSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSLRSQD
IQYNGSELSCFDQPRLRHCAHRACCQYHRDSAPMYGPVHLIPSLCCEEARSSARAVLGCGLRSPTTLQER
NPASVGDTMPAFFGSVSRSICAEFSDAWPLMQNPLGGDSSLCDSYPELTGEDTNSLNPENESAASLDSSG
GQDLAGTAALESSGNVSESTDSPRHGDTGTVWEQTLAQDAQRTPSQGGWEDRENLNLAMPTAFQDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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