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Report for CCDS89409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89409.1 Public Mus musculus 19 Cuedc2 23 108 98 CCDS HistoryNCBI Gene:67116Re-query CCDS DB by CCDS ID:89409.1Re-query CCDS DB by GeneID:67116See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236980.1 ENSMUSP00000158362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236980.1Link to Ensembl Protein Viewer:ENSMUSP00000158362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236980Re-query CCDS DB by Protein ID:ENSMUSP00000158362
Original member Current member NCBI NM_001164294.1 NP_001157766.1 Accepted alive Link to Nucleotide Sequence:NM_001164294.1Link to Protein Sequence:NP_001157766.1Re-query CCDS DB by Nucleotide ID:NM_001164294Re-query CCDS DB by Protein ID:NP_001157766Link to BLAST:NP_001157766.1
Original member Current member NCBI NM_001164295.1 NP_001157767.1 Accepted alive Link to Nucleotide Sequence:NM_001164295.1Link to Protein Sequence:NP_001157767.1Re-query CCDS DB by Nucleotide ID:NM_001164295Re-query CCDS DB by Protein ID:NP_001157767Link to BLAST:NP_001157767.1

Chromosomal Locations for CCDS 89409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46330688 46330834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46330920 46330980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331052 46331113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331290 46331466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331546 46331619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331757 46331818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46331913 46332056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46332618 46332691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGAGTTGGAGAGGATCGTCGGCTCAGCCCTCCTCACCTTCGTTCAGGCACACCTGCCAGAGGCAGACC
TCAGTGGCTTGGATGAAGTCATCTTCTCCTATGTGCTTGGGGTCCTGGAGGACCTGGGCCCCTCAGGACC
ATCAGAGGAGAACTTTGATATGGAGGCCTTCACTGAAATGATGGAGGCTTATGTGCCTGGCTTTGCCCAC
ATCCCCAGAGGTATAATAGGAGACATGATGCAGAAGCTCTCGGTGCAGCTGAGCGATGCTAGGAACAAAG
AGACCCCGAGGCAAGCTGAAAAGCTCGAAGAAGAGAGCAGGCCTCCCGCTGCTCCCGGGAACACCCTAGA
TGAGGCAGCTGCGGCAGAAGAACTGCCAGGAGTCGATGTGCTCCTGGAGGTCTTCCCTACCTGCTCTATG
GAGCAGGCCCAGTGGGTGCTGGCCAAAGCTCGGGGGGACTTGGAGGAAGCTGTGCACATGCTGGTAGAGG
GCAAGGAAGAGGGGCCTCCAGGCTGGGACGGCCCAAGTCAGGACTTGCCCAGGCGTCTCAGAGGCCCCCA
AAAGGATGACTTGAAGTCTTTCATCCTTCAGAAGTACATGATGGTGGACAGGGCGGAGGACCAGAAGACT
CACCGACCTATGGCTCCCAAGGAGGCCCCCAAGAAGCTGATCCGATACATCGACAACCAAGTAGTGAGCA
CCAAGGGAGAGCGATTCAAAGATGTCCGGAACCCTGAGGCCGAGGAGATGAAGGCCACATACATCAACCT
CAAGCCGGCCAGAAAGTACCGCTTCCACTGA

Translation (266 aa):
MELERIVGSALLTFVQAHLPEADLSGLDEVIFSYVLGVLEDLGPSGPSEENFDMEAFTEMMEAYVPGFAH
IPRGIIGDMMQKLSVQLSDARNKETPRQAEKLEEESRPPAAPGNTLDEAAAAEELPGVDVLLEVFPTCSM
EQAQWVLAKARGDLEEAVHMLVEGKEEGPPGWDGPSQDLPRRLRGPQKDDLKSFILQKYMMVDRAEDQKT
HRPMAPKEAPKKLIRYIDNQVVSTKGERFKDVRNPEAEEMKATYINLKPARKYRFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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