NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89510.1 Public Mus musculus 2 Or4x13 23 108 98 CCDS HistoryNCBI Gene:258330Re-query CCDS DB by CCDS ID:89510.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216111.2 ENSMUSP00000148849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216111.2Link to Ensembl Protein Viewer:ENSMUSP00000148849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216111Re-query CCDS DB by Protein ID:ENSMUSP00000148849
Original member Current member EBI ENSMUST00000120681.2 ENSMUSP00000151089.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120681.2Link to Ensembl Protein Viewer:ENSMUSP00000151089.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120681Re-query CCDS DB by Protein ID:ENSMUSP00000151089
Original member Current member NCBI NM_146263.2 NP_666375.2 Accepted alive Link to Nucleotide Sequence:NM_146263.2Link to Protein Sequence:NP_666375.2Re-query CCDS DB by Nucleotide ID:NM_146263Re-query CCDS DB by Protein ID:NP_666375Link to BLAST:NP_666375.2

Chromosomal Locations for CCDS 89510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90400663 90401592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCTGACATACACAATGTGACTGAGTTCTTTTTTCTGGGACTCTCTTCTAATCAAGAGGTGCAGAGAG
TTTGCTTTGTGATATTTCTGTTTTTGTACATGGCCATTGTGTTTGGAAATCTTCTCATGGTGGTCATTGT
GGCAGTCAGCAGAAATCTTGGATCCCCCATGTACTTCTTCCTCAGCTCCCTCTCCTTTGTGGAGATCTGC
TACTCCTCCACGACAGCCCCAAAACTCATCGTGGATCTCCTAGCTGAAAAGAAATCCATATCTGTATGGG
GCTGCATGGCACAGCTTTTCTTCATGCACTTCTTTGGTGGCATTGAGATGTTCCTGCTTACGATGATGGC
CTATGACCGCTATGTGGCCATTTGCAAGCCTCTGCACTACACCAGCATCATGAACCGACAGGTGTGTACA
GTCCTTGTAGGAATGGCATGGATGGGAGGTTTTGTCCATTCCCTTGCCCAGGTCCTTCTCATCTTCCGCT
TGCCCTTCTGTGGCCCCAATATCATTGACCATTATTTCTGTGATGTGCTTCCTGTGCTTAAACTTGTCTG
CTCAGACACCTTCCTCATTGGTCTGCTGATTGTTGTCAATGGGGGAACACTGTCGGTGATCAGCTTTGTG
GTCCTCTTATCATCCTATGCAGTCATCTTGTTCCACCTGAGAACTCAGAGTGCTGAGGGACGTCGCAAAG
CTCTGTCCACCTGTGGGTCCCATGTCACTGTGGTTGTCATATTTTTTGCACCCTGTGTCTTCATCTATCT
GAGACCGACAGCCACTCTTCCTATAGACAAGATGGTAACTGTGTTCTACACCGTGATAACTCCCCTCCTC
AACCCTATCATCTACTCCCTGAGAAATGCAGAAGTGAAGAAAGCCATTAAGATTCTATGGACCAGGGCAA
CAAAAGTAGATAAAAAATAG

Translation (309 aa):
MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVFGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEIC
YSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLTMMAYDRYVAICKPLHYTSIMNRQVCT
VLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLSVISFV
VLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLL
NPIIYSLRNAEVKKAIKILWTRATKVDKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH