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Report for CCDS21542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21542.1 Public Mus musculus 7 Or51d1 23 108 98 CCDS HistoryNCBI Gene:258358Re-query CCDS DB by CCDS ID:21542.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098218.2 ENSMUSP00000095821.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098218.2Link to Ensembl Protein Viewer:ENSMUSP00000095821.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098218Re-query CCDS DB by Protein ID:ENSMUSP00000095821
Original member Current member EBI ENSMUST00000215423.1 ENSMUSP00000150621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215423.1Link to Ensembl Protein Viewer:ENSMUSP00000150621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215423Re-query CCDS DB by Protein ID:ENSMUSP00000150621
Original member Current member NCBI NM_146361.2 NP_666473.2 Accepted alive Link to Nucleotide Sequence:NM_146361.2Link to Protein Sequence:NP_666473.2Re-query CCDS DB by Nucleotide ID:NM_146361Re-query CCDS DB by Protein ID:NP_666473Link to BLAST:NP_666473.2

Chromosomal Locations for CCDS 21542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102698240 102699208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGCCACAGCCCTTGGTCCCTCTCATCGCCACCCCAAATGGAAGTTTGGCCCATCCAGCCTATTTTCTAC
TGGTAGGCATCCCTGGCCTAGGATCTAAAATCCACTTTTGGCTGGCTTTCCCCTTATGCTTTATGTATGC
AGTGGCCACACTGGGCAACCTGGCCATCATCTTCATCATTCGTGTGGAGAGGCGCTTGCATGAGCCCATG
TACCTCTTCCTCGCCATGCTTTCTACCATTGACTTGGTCCTCTCTTCTGTTACCATGCCCAAAATGGCCA
GCTTGTTCCTAACTGGCATTCAGGAGATCGAGTTCAACATTTGCTTGACCCAAATGTTCCTTATTCATGC
CCTATCTGCCATGGAGTCTGCTGTCCTGCTGGCCATGGCTTTTGACCGCTTTGTGGCCATCTGCTACCCG
TTACGCCATGCTTCTGTGCTCACAGGGACTACTGTCGCCAAGATTGGCCTAGCTTCCCTAGCCAGGGGAT
TTGTATTCTTCTTTCCACTGCCTTTCCTTTTGAAGCGTCTGTCATATTGCCAAACACATACTGTCACACA
CTCCTTCTGTCTCCATCAAGACATTATGAAGCTGTCCTGTACTGATACCAAAGTTAATGTCGTTTATGGG
CTCTTCATCATCCTATCAGTCATGGGTGTGGACTCCCTCTTCATTGGCTTTTCCTATATCCTCATCCTGA
GGGCTGTGTTGGAGCTTTCAACTCGAGGGGCAGCACTCAAGGCTTTCAACACCTGCATCTCCCACCTCTG
TGCTGTCCTGGTCTTCTATGTACCCCTCATTGGGCTATCAGTGGTACATAGGCTGGGTGGTCCCACATCT
TTGGTCCATGTGGTTATGGCTAATATCTATCTCCTGCTACCACCTGTAGTCAATCCCATTGTGTATGGAG
CAAAGACCAAGGAGATCCGTTCAAGGGTTATCCGTATGTTTTCACAAGATGGCAGGTGA

Translation (322 aa):
MPQPLVPLIATPNGSLAHPAYFLLVGIPGLGSKIHFWLAFPLCFMYAVATLGNLAIIFIIRVERRLHEPM
YLFLAMLSTIDLVLSSVTMPKMASLFLTGIQEIEFNICLTQMFLIHALSAMESAVLLAMAFDRFVAICYP
LRHASVLTGTTVAKIGLASLARGFVFFFPLPFLLKRLSYCQTHTVTHSFCLHQDIMKLSCTDTKVNVVYG
LFIILSVMGVDSLFIGFSYILILRAVLELSTRGAALKAFNTCISHLCAVLVFYVPLIGLSVVHRLGGPTS
LVHVVMANIYLLLPPVVNPIVYGAKTKEIRSRVIRMFSQDGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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