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Report for CCDS4312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4312.1 Public Homo sapiens 5 CCDC69 24 110 108 CCDS HistoryNCBI Gene:26112Re-query CCDS DB by CCDS ID:4312.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355417.7 ENSP00000347586.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355417.7Link to Ensembl Protein Viewer:ENSP00000347586.2Re-query CCDS DB by Nucleotide ID:ENST00000355417Re-query CCDS DB by Protein ID:ENSP00000347586
Original member Current member NCBI NM_015621.3 NP_056436.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015621.3Link to Protein Sequence:NP_056436.2Re-query CCDS DB by Nucleotide ID:NM_015621Re-query CCDS DB by Protein ID:NP_056436Link to BLAST:NP_056436.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056436.2 296 A6NI79 296 100% 0 0

Chromosomal Locations for CCDS 4312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151183437 151183614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151184344 151184441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151185422 151185541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151186023 151186124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151187386 151187459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151198997 151199084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151201582 151201688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151205400 151205475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151223923 151223970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGGCTGCAGACACAGCAGGCTGAGCAGCTGCAAACCCCCGAAAAAGAAGCGCCAAGAACCAGAACCAG
AACAGCCACCCAGACCAGAGCCCCATGAATTAGGTCCCCTCAATGGGGACACAGCTATAACTGTCCAGCT
CTGTGCATCAGAGGAGGCTGAGCGGCACCAGAAGGATATAACCAGAATTCTCCAGCAACATGAGGAGGAA
AAGAAGAAATGGGCACAACAGGTGGAGAAGGAAAGGGAGCTAGAGCTTCGAGACAGACTGGATGAGCAGC
AAAGGGTCCTGGAAGGAAAGAATGAAGAGGCCCTGCAAGTCCTCCGGGCCTCATATGAACAGGAGAAAGA
AGCGCTTACCCACTCTTTCCGGGAGGCCAGTTCTACCCAGCAGGAGACCATAGACAGACTGACCTCACAG
CTGGAGGCTTTCCAGGCCAAAATGAAGAGGGTGGAGGAGTCCATTCTGAGCCGAAACTATAAGAAACATA
TCCAGGATTATGGGAGCCCCAGCCAGTTCTGGGAGCAGGAGCTGGAGAGCTTACACTTTGTCATCGAGAT
GAAGAATGAGCGTATTCATGAGCTGGACAGGCGGCTGATCCTCATGGAAACAGTGAAAGAGAAAAATCTG
ATATTGGAGGAAAAAATTACGACCCTGCAACAGGAAAATGAGGACCTCCATGTCCGAAGCCGCAACCAGG
TGGTCCTGTCAAGGCAGCTGTCAGAAGACCTGCTTCTCACGCGTGAGGCCCTGGAGAAGGAGGTGCAGCT
GCGGCGACAGCTCCAGCAGGAGAAGGAGGAGCTGTTGTACCGGGTCCTTGGGGCCAATGCCTCGCCTGCC
TTCCCTCTGGCCCCTGTCACTCCCACTGAGGTCTCTTTCCTCGCCACATAG

Translation (296 aa):
MGCRHSRLSSCKPPKKKRQEPEPEQPPRPEPHELGPLNGDTAITVQLCASEEAERHQKDITRILQQHEEE
KKKWAQQVEKERELELRDRLDEQQRVLEGKNEEALQVLRASYEQEKEALTHSFREASSTQQETIDRLTSQ
LEAFQAKMKRVEESILSRNYKKHIQDYGSPSQFWEQELESLHFVIEMKNERIHELDRRLILMETVKEKNL
ILEEKITTLQQENEDLHVRSRNQVVLSRQLSEDLLLTREALEKEVQLRRQLQQEKEELLYRVLGANASPA
FPLAPVTPTEVSFLAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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