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Report for CCDS14411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14411.1 Public Homo sapiens X ITGB1BP2 24 110 108 CCDS HistoryNCBI Gene:26548Re-query CCDS DB by CCDS ID:14411.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373829.8 ENSP00000362935.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373829.8Link to Ensembl Protein Viewer:ENSP00000362935.3Re-query CCDS DB by Nucleotide ID:ENST00000373829Re-query CCDS DB by Protein ID:ENSP00000362935
Original member Current member NCBI NM_012278.4 NP_036410.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012278.4Link to Protein Sequence:NP_036410.1Re-query CCDS DB by Nucleotide ID:NM_012278Re-query CCDS DB by Protein ID:NP_036410Link to BLAST:NP_036410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036410.1 347 Q9UKP3-1 347 100% 0 0

Chromosomal Locations for CCDS 14411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71301807 71301870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71302137 71302186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71302277 71302333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71302411 71302556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71303262 71303356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71303461 71303516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71303627 71303697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71303812 71303911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71304187 71304300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71304542 71304604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71304965 71305192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGTCTCTACTCTGTCGTAACAAAGGCTGTGGGCAGCACTTTGACCCTAATACCAACCTTCCTGATTCCT
GTTGCCATCACCCTGGGGTCCCAATCTTCCATGATGCACTTAAGGGTTGGTCCTGCTGCCGAAAGCGAAC
TGTAGATTTCTCTGAGTTCTTAAACATCAAGGGCTGTACTATGGGACCACACTGTGCTGAGAAGCTTCCT
GAGGCCCCTCAACCTGAAGGCCCTGCTACAAGCAGTTCACTTCAGGAGCAAAAACCTCTGAATGTGATTC
CAAAGTCAGCAGAGACCTTGCGCCGGGAGAGGCCCAAGTCAGAGTTGCCTCTGAAGCTGCTGCCGCTAAA
TATATCCCAAGCCCTGGAAATGGCATTGGAACAGAAGGAATTAGACCAGGAACCTGGGGCAGGACTTGAC
AGTCTGATCCGGACTGGTTCCAGCTGCCAGAACCCAGGATGTGATGCTGTTTACCAAGGCCCTGAGAGTG
ATGCTACTCCATGTACCTACCACCCAGGAGCACCCCGATTCCATGAGGGGATGAAGTCTTGGAGCTGTTG
TGGCATCCAGACCCTGGATTTTGGGGCATTCTTGGCACAACCAGGGTGCAGAGTCGGTAGACATGACTGG
GGGAAGCAGCTCCCAGCATCTTGCCGCCATGATTGGCACCAGACAGATTCCTTAGTAGTGGTGACTGTAT
ATGGCCAGATTCCACTTCCTGCGTTTAACTGGGTGAAGGCCAGTCAAACTGAGCTTCATGTCCACATTGT
CTTTGATGGTAACCGTGTGTTCCAAGCACAGATGAAGCTCTGGGGGGTCATAAACGTGGAGCAGAGCTCT
GTCTTCTTGATGCCATCTCGGGTTGAAATCTCCCTGGTCAAGGCTGACCCAGGATCCTGGGCCCAGCTGG
AGCACCCTGATGCACTAGCTAAGAAGGCTAGGGCAGGGGTTGTGTTAGAGATGGATGAGGAAGAATCTGA
CGATTCAGATGATGATCTGAGCTGGACAGAGGAGGAGGAAGAGGAGGAAGCAATGGGGGAATAG

Translation (347 aa):
MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTMGPHCAEKLP
EAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLNISQALEMALEQKELDQEPGAGLD
SLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDW
GKQLPASCRHDWHQTDSLVVVTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSS
VFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVLEMDEEESDDSDDDLSWTEEEEEEEAMGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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