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Report for CCDS79477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79477.1 Public Mus musculus 16 Krtap15-1 23 108 98 CCDS HistoryNCBI Gene:26560Re-query CCDS DB by CCDS ID:79477.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187823.1 ENSMUSP00000140888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187823.1Link to Ensembl Protein Viewer:ENSMUSP00000140888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187823Re-query CCDS DB by Protein ID:ENSMUSP00000140888
Original member Current member NCBI NM_013713.2 NP_038741.1 Accepted alive Link to Nucleotide Sequence:NM_013713.2Link to Protein Sequence:NP_038741.1Re-query CCDS DB by Nucleotide ID:NM_013713Re-query CCDS DB by Protein ID:NP_038741Link to BLAST:NP_038741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038741.1 150 Q9QZU5 150 100% 0 0

Chromosomal Locations for CCDS 79477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88829047 88829499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTCTTACACTTGCAACTCTGGAAACTACTCCTCACAGTCTTTTGGAGGTTTCTTGAGGCAGCCAGTCT
CTACCTACAACTCCTTCTACCCCACCAGCAATGTAGTCTATTCTCCAAAGAACTTCCAGCTGGGATCCTC
TTTCTACAATGGACAGCAGGAGACCTTCAGTGAGCCACTTGAAGGCCACTTGCCCTGTGTGGGGTCTGCA
TCCTTCCACACATCCTGTTTCCGGCCTAAGCAATACTTCTCCAGCCCCTGCCAGGGAGGCTTTACCGGAT
CTTTTGGATATGGCAATACTGGCTTTGGAGCTTTTGGGTTTGGAAGCTCTGGCATTCGCTCTCAGGGCTG
TGGATCCAACTTCTACCGTCCAGGATACTTTTCTTCTAAGAGTATCCAGTCATCTTACTACCAGCCAGGC
TACAGCTCTGGCTTTTGCGGGTCAAATTTCTGA

Translation (150 aa):
MSYTCNSGNYSSQSFGGFLRQPVSTYNSFYPTSNVVYSPKNFQLGSSFYNGQQETFSEPLEGHLPCVGSA
SFHTSCFRPKQYFSSPCQGGFTGSFGYGNTGFGAFGFGSSGIRSQGCGSNFYRPGYFSSKSIQSSYYQPG
YSSGFCGSNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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