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Report for CCDS19177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19177.1 Public Mus musculus 5 Snx17 23 108 98 CCDS HistoryNCBI Gene:266781Re-query CCDS DB by CCDS ID:19177.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031029.14 ENSMUSP00000031029.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031029.14Link to Ensembl Protein Viewer:ENSMUSP00000031029.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031029Re-query CCDS DB by Protein ID:ENSMUSP00000031029
Original member NCBI NM_153680.2 NP_710147.1 Updated not alive Link to Nucleotide Sequence:NM_153680.2Link to Protein Sequence:NP_710147.1Re-query CCDS DB by Nucleotide ID:NM_153680Re-query CCDS DB by Protein ID:NP_710147
Current member NCBI NM_153680.3 NP_710147.1 Accepted alive Link to Nucleotide Sequence:NM_153680.3Link to Protein Sequence:NP_710147.1Re-query CCDS DB by Nucleotide ID:NM_153680Re-query CCDS DB by Protein ID:NP_710147Link to BLAST:NP_710147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_710147.1 470 Q8BVL3 470 100% 0 0

Chromosomal Locations for CCDS 19177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31193403 31193465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31193869 31193943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31194796 31194913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31195415 31195479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31195746 31195856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31195951 31196041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31196177 31196264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31196481 31196550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31196983 31197075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31197170 31197373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31197621 31197746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31197863 31197940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31198070 31198144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31198236 31198277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31198358 31198471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGCACTTTTCCATTCCTGAAACGGAGTCCCGCAGTGGGGACAGCGGCGGCTCCGCCTACGTGGCCTATA
ACATTCACGTGAATGGAGTCCTGCACTGTCGGGTGCGCTACAGCCAGCTTCTGGGGCTGCACGAGCAGCT
TCGGAAGGAGTATGGGGCCAACGTGGTTCCTGCATTCCCCCCAAAGAAGCTGTTCTCTTTGACCCCTGCA
GAGGTGGAGCAGAGGAGAGAGCAGTTGGAGAAGTACATGCAAGCTGTTCGGCAAGACCCATTGCTTGGGA
GCAGTGAGACTTTTAATAGCTTTCTACGTCGGGCCCAACAGGAGACCCAACAGGTGCCCACAGAGGAGGT
TTCCTTGGAAGTGCTGCTCAGCAATGGACAGAAAGTTCTGGTAACTGTGCTAACTTCTGACCAGACAGAA
GATGTCCTGGAGGCTGTGGCTGCAAAGCTGGATCTTCCAGATGACTTGATCGGATATTTTAGTCTCTTCC
TTGTTCGAGAAAAAGAAGATGGAGCCTTTTCTTTTGTACGGAAGCTGCAGGAGTTTGAACTGCCTTATGT
TTCTGTTACCAGTCTTCGGAGTCAAGAGTATAAGATTGTGCTCAGAAAGAGTTATTGGGACTCTGCCTAT
GACGACGATGTCATGGAGAACCGGGTTGGCCTGAACCTGCTTTATGCTCAGACGGTGTCAGACATTGAGC
ATGGCTGGATCCTGGTCACCAAAGAGCAGCACCGGCAGCTCAAATCTCTGCAAGAGAAGGTCTCCAAAAA
GGAGTTCTTGCGGCTGGCCCAAACTCTGCGGCACTATGGCTATCTGCGCTTTGATGCCTGTGTGGCTGAC
TTTCCAGAGAAGGATTGCCCTGTTGTGGTGAGCGCAGGCAACAGTGAGCTCAGTCTCCAGCTGCGACTAC
CAGGCCAGCAACTCCGTGAAGGCTCTTTCCGTGTTACCCGAATGCGATGCTGGCGGGTCACCTCCTCTGT
GCCACTCCCTAGTGGGGGCACGAGCAGTCCAAGCCGGGGTCGGGGTGAGGTTCGCCTGGAACTGGCTTTT
GAATACCTCATGAGCAAGGACCGGCTACAGTGGGTCACCATCACCAGCCCACAGGCTATCATGATGAGCA
TCTGCCTGCAGTCCATGGTAGATGAGCTGATGGTGAAGAAATCTGGGGGCAGTATCAGGAAGATGCTGCG
CCGGCGGGTGGGGGGCACCCTGAGACGTTCAGACAGCCAGCAAGCAGTGAAGTCCCCACCATTGCTCGAG
TCACCAGACGCCAGCCGGGAGTCCATGGTGAAACTCTCAAGTAAACTGAGTGCTGTGAGCTTGCGGGGGA
TTGGCAGTCCCAGCACAGATGCCAGTGCCAGTGCCGTCCACGGCAATTTCGCCTTCGAGGGCATTGGAGA
TGAGGATCTGTAA

Translation (470 aa):
MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVVPAFPPKKLFSLTPA
EVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVTVLTSDQTE
DVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAY
DDDVMENRVGLNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVAD
FPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPSRGRGEVRLELAF
EYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
SPDASRESMVKLSSKLSAVSLRGIGSPSTDASASAVHGNFAFEGIGDEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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