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Report for CCDS48531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48531.1 Public Mus musculus 10 Rnf217 23 108 98 CCDS HistoryNCBI Gene:268291Re-query CCDS DB by CCDS ID:48531.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081989.7 ENSMUSP00000080650.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081989.7Link to Ensembl Protein Viewer:ENSMUSP00000080650.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081989Re-query CCDS DB by Protein ID:ENSMUSP00000080650
Original member Current member NCBI NM_001146349.1 NP_001139821.1 Accepted alive Link to Nucleotide Sequence:NM_001146349.1Link to Protein Sequence:NP_001139821.1Re-query CCDS DB by Nucleotide ID:NM_001146349Re-query CCDS DB by Protein ID:NP_001139821Link to BLAST:NP_001139821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139821.1 515 D3YYI7 515 100% 0 0

Chromosomal Locations for CCDS 48531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 31502658 31502731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31503751 31503822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31505773 31505974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31517384 31517548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31534663 31534896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31608384 31609184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGGCGAGGAGCAGAGCACGGTGAGCGGCAGCGGCGGGGCGCGGGCCTCTGGCGGAGGCTCGGCGGGCC
AGCCCGAGTCCCCCAGGCCGCGAGGGGACCGCGTCCGGACAGCCGGGCCGCGCGCTGCAGCCTCCTCTTC
ACGGCCGAACGGCGGCGGCGGCGGCAGAGACCCGGGCTGCGTGGACGCGAGTGTCCAGGAGCCTGCGAGC
AACCGGGCCCCGGCAGGGCAGCCCGCGCGACTGCCACTCAGCGGGCCCCTGGACCCCCAGAGTCTGGAAC
TGCAGCTGGAGCGCGAGGCGGAGGGAGCGGGGCCACGGGAGGCGCCCCCCGGCCAGCAGCCCCCCGACGG
GCTGCTCCTGGACGTGCTGGCCCAGCGACACCCGCCCCCCGCCAAGCCGCAAGTCCTCTGCTCCGTGTAC
TGCGTGGAGAGCGACTTGCCCGAGGCCCCCTCCGCCGAGTCCCCGTCGCCGTCGGAGTCCCCACCTCAAG
CACCGCTGGGGCCGATTCCCGCCAGCCCGCCGCCCTCCTTCCCCAGCTCCCCGCTGTCGCTCCCGGCTGA
CCCCCTTTCCCCCGACGGCGGCAGCATCGAGCTGGAGTTCTACCTGGCTCCGGAGCCCTTCTCCGTGCCT
GGCCTATTAGGGGCTCCACCCTACTCTGGCCTGGGGGGAGTAGGGGACCCCTATGCGCCCCTCATGGTGC
TGATGTGCCGGGTGTGCCTGGAAGACAAACCCATCAAGCCCCTGCCCTGCTGCAAGAAGGCGGTGTGCGA
GGAGTGCCTCAAAATCTACCTGAGCTCTCAGGTACAACTTGGCCAAGTAGAAATCAAATGCCCAGTCACA
GAGTGTTTCGAATTCCTGGAGGAAACAACTGTTGTCTACAATTTAACCCATGAGGACTCTATCAAGTATA
AGTACTTCTTGGAACTTGGCCGAATTGACTCCAGCACCAAGCCATGTCCTCAATGCAAACACTTCACAAC
CTTTAAGAAAAAAGGACATATCCCCACTCCTTCCAGATCAGAAAGCAGATACAAAATCCAGTGTCCCACT
TGCCAATTGATCTGGTGTTTTAAGTGCCACTCTCCTTGGCATGAAGGTGTTAACTGCAAGGAGTACAAAA
AAGGAGACAAGTTACTGCGTCACTGGGCCAGTGAGATTGAGCACGGGCAGAGAAATGCCCAGAAGTGTCC
AAAGTGCAAGATCCATATCCAGAGAACAGAAGGGTGTGACCATATGACTTGTTCACAGTGTAACACTAAT
TTTTGCTATCGATGTGGAGAGAGATACCGCCAGCTCCGGTTTTTCGGAGACCACACATCAAACCTCAGTA
TATTTGGATGCAAATATCGCTACCTCCCAGAGAGACCTCATTTAAGAAGATTAGTTCGAGGGTCAGTCTG
TGCTGGAAAGCTCTTCATTGCGCCTCTCATCCTGGTTTTGGGATTGGCACTAGGGGCCATAGCAGTTGTA
ATCGGTTTATTTGTATTTCCTATATATTGCCTTTGTAAAAAACAGAGAAAGCGATCACGGACAGGTATGC
ACTGGTAA

Translation (515 aa):
MGEEQSTVSGSGGARASGGGSAGQPESPRPRGDRVRTAGPRAAASSSRPNGGGGGRDPGCVDASVQEPAS
NRAPAGQPARLPLSGPLDPQSLELQLEREAEGAGPREAPPGQQPPDGLLLDVLAQRHPPPAKPQVLCSVY
CVESDLPEAPSAESPSPSESPPQAPLGPIPASPPPSFPSSPLSLPADPLSPDGGSIELEFYLAPEPFSVP
GLLGAPPYSGLGGVGDPYAPLMVLMCRVCLEDKPIKPLPCCKKAVCEECLKIYLSSQVQLGQVEIKCPVT
ECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESRYKIQCPT
CQLIWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTN
FCYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPLILVLGLALGAIAVV
IGLFVFPIYCLCKKQRKRSRTGMHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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