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Report for CCDS22920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22920.1 Public Mus musculus 9 Ecsit 23 108 98 CCDS HistoryNCBI Gene:26940Re-query CCDS DB by CCDS ID:22920.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098937.9 ENSMUSP00000096537.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098937.9Link to Ensembl Protein Viewer:ENSMUSP00000096537.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098937Re-query CCDS DB by Protein ID:ENSMUSP00000096537
Original member Current member EBI ENSMUST00000180180.7 ENSMUSP00000136247.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180180.7Link to Ensembl Protein Viewer:ENSMUSP00000136247.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180180Re-query CCDS DB by Protein ID:ENSMUSP00000136247
Original member Current member EBI ENSMUST00000179422.7 ENSMUSP00000137424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179422.7Link to Ensembl Protein Viewer:ENSMUSP00000137424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179422Re-query CCDS DB by Protein ID:ENSMUSP00000137424
Original member NCBI NM_001253897.1 NP_001240826.1 Updated not alive Link to Nucleotide Sequence:NM_001253897.1Link to Protein Sequence:NP_001240826.1Re-query CCDS DB by Nucleotide ID:NM_001253897Re-query CCDS DB by Protein ID:NP_001240826
Current member NCBI NM_001253897.2 NP_001240826.1 Accepted alive Link to Nucleotide Sequence:NM_001253897.2Link to Protein Sequence:NP_001240826.1Re-query CCDS DB by Nucleotide ID:NM_001253897Re-query CCDS DB by Protein ID:NP_001240826Link to BLAST:NP_001240826.1
Original member NCBI NM_001253898.1 NP_001240827.1 Updated not alive Link to Nucleotide Sequence:NM_001253898.1Link to Protein Sequence:NP_001240827.1Re-query CCDS DB by Nucleotide ID:NM_001253898Re-query CCDS DB by Protein ID:NP_001240827
Current member NCBI NM_001253898.2 NP_001240827.1 Accepted alive Link to Nucleotide Sequence:NM_001253898.2Link to Protein Sequence:NP_001240827.1Re-query CCDS DB by Nucleotide ID:NM_001253898Re-query CCDS DB by Protein ID:NP_001240827Link to BLAST:NP_001240827.1
Original member NCBI NM_012029.2 NP_036159.1 Updated not alive Link to Nucleotide Sequence:NM_012029.2Link to Protein Sequence:NP_036159.1Re-query CCDS DB by Nucleotide ID:NM_012029Re-query CCDS DB by Protein ID:NP_036159
Current member NCBI NM_012029.3 NP_036159.1 Accepted alive Link to Nucleotide Sequence:NM_012029.3Link to Protein Sequence:NP_036159.1Re-query CCDS DB by Nucleotide ID:NM_012029Re-query CCDS DB by Protein ID:NP_036159Link to BLAST:NP_036159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240826.1 435 Q9QZH6 435 99.7701% 0 1
NP_001240827.1 435 Q9QZH6 435 99.7701% 0 1
NP_036159.1 435 Q9QZH6 435 99.7701% 0 1

Chromosomal Locations for CCDS 22920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 22072324 22072580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22072982 22073087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22073426 22073574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22073683 22073740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22074591 22074814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22076228 22076645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 22078148 22078243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGAGCTGGGTGCAGGTCAACTTGCTGGTGCGAAGCCTCTCTAGGGGCTGGGGAGGCCTCTGCAGGCCTG
CCCTTTCAGGAACTCCCTTTGCTCAGGTGTCCCTCCAGGCTCTACGAGGCCTTCACTGTAGTGCAGCTAC
ACACAAGGATGAGCCGTGGTTGGTTCCTCGACCCCCGGAGCCCCAGAGGAAGCCCATCAAGGTTCCAGCA
ATGCATGAAGACTCGTTCAAGCCATCAGGAAACAGGGAGCGGGACAAGGCAAGCTTCCTGAACGCAGTGC
GCAGCTTTGGGGCGCACAATGTGCGCAAGCGCGGCCACGTGGACTTCATCTACCTAGCACTGCGCAAGAT
GCCAGAGTTTGGTGTGGAGCGGGACTTGTCAGTATACAACCTGCTGCTGGATGTTTTCCCCAAGGAGGTC
TTCCGGCCCCGCAACGTTATCCAGCGCATCTTCGTCCACTACCCACGGCAGCAGGAATGTGGGGTCGCAG
TCCTGGAGCAGATGGAACGACACGGGGTCATGCCCAGCGCAGAGACAGAGTTCCTACTGATTCAGATATT
CGGGCGCAAAAGTTACCCCATGCTCAAGTTCCTGCGGATGAAGCTGTGGTTCACCCGATTCAAGAATATC
AACCCCTACCCAGTGCCCCGAGATCTTCCCCAGGACCCTTTGGACCTGGCCAAGCTAGGCCTGCGACACA
TGGAGCCTGACCTCAGTGCTAAGGTCACTGTCTACCAGATGTCTTTGCCCAGTGACTCGACAGGCATGGA
AGATCCCACACAGCCTCACATTGTAGGAATCCAGAGTCCAGATCAGCAAGCTGCCCTGGCCCGCCACAAC
CCATCCAGGCCTGTTTTTGTTGAGGGCCCCTTCCCTCTCTGGCTTCGTAATAAGTGTGTCTACTATCACA
TCCTAAGAGCTGACCTGCCACCTCCTGAGGAAGAGAAAGTAGAGGAGATCCCAGAAGAATGGGAGCTGTA
CTACCCACAGAAGCTGGACCTGGAATATTCAAGGAGTGGTTGGGACGACTATGAGTTTGACGTGGATGAA
GTGACAGAAGGCCCTGTCTTCGCCATGTGCATGGCTGGTGCCCATGATCAGGCAACATTGATCAAGTGGA
TCCAAGGCTTGCAGGAGACCAACCCAACCCTGGCACAGATCCCAGTGGTATTCCGCCTGGCCAGGTCCAC
GGGGGAGCTCCTGACAACTTCAAGGCTGGAGGGACAGTCCCCTCCCCACAGTCCTCCCAAGGGGCCTGAG
GAAGATGATGAGACCATTCAGGCAGAGCAGCAGCAGGGGCAAAGTTGA

Translation (435 aa):
MSWVQVNLLVRSLSRGWGGLCRPALSGTPFAQVSLQALRGLHCSAATHKDEPWLVPRPPEPQRKPIKVPA
MHEDSFKPSGNRERDKASFLNAVRSFGAHNVRKRGHVDFIYLALRKMPEFGVERDLSVYNLLLDVFPKEV
FRPRNVIQRIFVHYPRQQECGVAVLEQMERHGVMPSAETEFLLIQIFGRKSYPMLKFLRMKLWFTRFKNI
NPYPVPRDLPQDPLDLAKLGLRHMEPDLSAKVTVYQMSLPSDSTGMEDPTQPHIVGIQSPDQQAALARHN
PSRPVFVEGPFPLWLRNKCVYYHILRADLPPPEEEKVEEIPEEWELYYPQKLDLEYSRSGWDDYEFDVDE
VTEGPVFAMCMAGAHDQATLIKWIQGLQETNPTLAQIPVVFRLARSTGELLTTSRLEGQSPPHSPPKGPE
EDDETIQAEQQQGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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