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Report for CCDS25472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25472.1 Public Mus musculus 11 Vat1 23 108 98 CCDS HistoryNCBI Gene:26949Re-query CCDS DB by CCDS ID:25472.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040430.7 ENSMUSP00000048350.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040430.7Link to Ensembl Protein Viewer:ENSMUSP00000048350.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040430Re-query CCDS DB by Protein ID:ENSMUSP00000048350
Original member Current member NCBI NM_012037.2 NP_036167.1 Accepted alive Link to Nucleotide Sequence:NM_012037.2Link to Protein Sequence:NP_036167.1Re-query CCDS DB by Nucleotide ID:NM_012037Re-query CCDS DB by Protein ID:NP_036167Link to BLAST:NP_036167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036167.1 406 Q62465 406 100% 0 0

Chromosomal Locations for CCDS 25472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101460193 101460276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101460377 101460618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101462198 101462287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101462390 101462560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101462909 101463116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101465708 101466133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGTCCGCGGAGAGGGAAGCAGCTGAGGCGGCCACTGTGGCAGCGGCGACCGAGGCCGGGGCGGAGACCG
GGACCGGAGCCGGGGAGGGTGCGCCTTCGCAGCCCCCGACAGTCGAGGTGGCAAGCGACCCGCAGCCACC
CCCGGCCCCCGAAGCGTCAGCATCCGCTTCGGCACCGCCACTGCGCTGCCTGGTACTCACCGGCTTCGGT
GGCTACGATAAGGTGAAGCTGCAGAGCCGGCCGGCGGTGCCCCCGGCCCCGGGTCCGGGTCAATTGACGC
TGCGCGTGCGAGCCTGTGGGCTCAACTTCGCCGACCTCATGGGCCGCCAAGGGCTGTACGACCGACTACC
GCCTCTGCCGGTCACCCCCGGCATGGAGGGCGCGGGCGTGGTAGTGGCAGTGGGCGAAGGCGTCGGCGAC
CGTAAGGCAGGGGATCGGGTGATGGTGTTGAACCGGTCAGGGATGTGGCAGGAGGAAGTAACTGTGCCAT
CAGCCCAGACTTTCCTGATGCCTGAGGCCATGACCTTTGAAGAAGCTGCTGCCTTGCTGGTCAATTATAT
CACCGCCTACATGGTTCTCTTTGACTTCGGCAACCTGAGACCGGGCCATAGCGTCTTGGTACACATGGCT
GCAGGTGGCGTGGGCATGGCAGCCCTGCAGTTGTGCCGCACCGTGGAGAACGTGACAGTGTTTGGAACGG
CCTCAGCCAGCAAGCACGAGGTGCTGAAGGAGAACGGGGTCACACACCCCATCGACTACCACACGACTGA
CTATGTGGACGAGATCAAAAAGATCTCCCCCAAAGGAGTAGACATCGTCATGGACCCTCTGGGTGGATCA
GACACGGCCAAGGGCTACCACCTCCTCAAACCCATGGGCAAAGTTGTCACTTACGGAATGGCTAACCTGC
TGACGGGCCCCAAGCGGAACCTGATGGCCATGGCCCGCACCTGGTGGAATCAGTTCAGTGTGACAGCTCT
GCAGCTGCTGCAGGCCAACCGAGCTGTGTGTGGCTTCCACCTGGGCTACCTGGATGGAGAGGTGGAACTC
GTCAATAGCGTGGTCACCCGCCTCGTGGCTCTGTACAATCAGGGCCACATCAAACCTCGAATTGACTCAG
TCTGGCCCTTCGAGAAGGTGGCAGATGCAATGAAACAGATGCAGGAGAAGAAGAACATAGGCAAAGTCCT
CCTGGTTCCTGGGCCTGAGAAGGAGACCTAG

Translation (406 aa):
MSAEREAAEAATVAAATEAGAETGTGAGEGAPSQPPTVEVASDPQPPPAPEASASASAPPLRCLVLTGFG
GYDKVKLQSRPAVPPAPGPGQLTLRVRACGLNFADLMGRQGLYDRLPPLPVTPGMEGAGVVVAVGEGVGD
RKAGDRVMVLNRSGMWQEEVTVPSAQTFLMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMA
AGGVGMAALQLCRTVENVTVFGTASASKHEVLKENGVTHPIDYHTTDYVDEIKKISPKGVDIVMDPLGGS
DTAKGYHLLKPMGKVVTYGMANLLTGPKRNLMAMARTWWNQFSVTALQLLQANRAVCGFHLGYLDGEVEL
VNSVVTRLVALYNQGHIKPRIDSVWPFEKVADAMKQMQEKKNIGKVLLVPGPEKET


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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