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Report for CCDS21394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21394.1 Public Mus musculus 7 Rccd1 23 108 98 CCDS HistoryNCBI Gene:269955Re-query CCDS DB by CCDS ID:21394.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047362.10 ENSMUSP00000048043.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047362.10Link to Ensembl Protein Viewer:ENSMUSP00000048043.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047362Re-query CCDS DB by Protein ID:ENSMUSP00000048043
Original member Current member EBI ENSMUST00000121882.7 ENSMUSP00000113273.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121882.7Link to Ensembl Protein Viewer:ENSMUSP00000113273.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121882Re-query CCDS DB by Protein ID:ENSMUSP00000113273
Original member Current member NCBI NM_173445.4 NP_775621.2 Accepted alive Link to Nucleotide Sequence:NM_173445.4Link to Protein Sequence:NP_775621.2Re-query CCDS DB by Nucleotide ID:NM_173445Re-query CCDS DB by Protein ID:NP_775621Link to BLAST:NP_775621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775621.2 377 Q8BTU7-1 377 100% 0 0

Chromosomal Locations for CCDS 21394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80316899 80317050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80317453 80317482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80318859 80319026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80319246 80319341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80320092 80320213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80320302 80320698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80320862 80321030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGCCGAGAAACGGCACGGAGCCTGGTTCGGCTTTGGTTTCTGTGGCTTCGGGCAAGCGCTGGGTTCTG
GGAACAGCCACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGATGATATTTGCCAAGTGAGCGC
AGGCTGGAGCTACACTGCCCTGGTGACCCGTGGAGGCCGGGTGGAATTGTCAGGTTCTGTGAGCGGTGCA
GCAGACGGCTGCAGGGACGTGTGGGCTTCGGAGGAACTCCTGGTGCTGCTACGCAACAAGGGCGGCTCCA
GCACGGAAGTGCAGGCCTGGGTACCAGGTTCTGCGTTACAGGGGGAGCCCCTCTGGGTCCAGAACTTGGT
TTCTGGGGCAAAGGGCCAAGGGGAAGATGAACCCAGCAGGGAGTCTAGGATGGGGACCCTGCCGTTGCTA
CCCTGCGCCCGTGCCTATGTGACCCCAGAACCACCCTTCTGCCAGCCTCTGGCCCCAGAGCTGCGGGTCC
GCCAGCTGGAGCTGGGAGCTGAGCATGTGCTGCTGTTGTGCGCAGCTGGCCAGGTGTTCTCCTGGGGTGC
GGGCAGGCATGGACAGCTGGGCCACGGGACTCTGGAGGCAGAACTAGAGCCAAGACTGTTGGAGGCACTG
CAGGGCCTGCGGATGGCTAAGGTGGCTGCAGGTGGCTGGCACTCTGTGTGTTTGAGTGAAACGGGGGATA
TTTATATCTGGGGCTGGAATGAGTCAGGGCAGCTGGCCCTGCCCACAAGGAGTGGGACAGAGAACAAAGC
AGAGAGAGAGGAAGCCACAGAATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTGTGGCTGATGCAGGA
GCTCCTGCCCACTTCATAGCCATCCAGCCCTTCCCTGCTCTTCTGGATCTTCCCCTGGGCTCAGATGCAG
TTATGGCCAGCTGCGGATCCCGACACACAGCTGTGGTGACACGCACAGGAGAACTCTATACCTGGGGCTG
GGGTAAATACGGACAGCTTGGCCACAAGGACAGCACCAGCTTGGATCGACCCTGCTGTGTGGAGTACTTT
GTAGAAAGACAACTTGAAGTAAGGGCTGTGACATGTGGACCCTGGAATACCTATGTCTATGCAATGGAAA
GAGACAAAAGCTGA

Translation (377 aa):
MAEKRHGAWFGFGFCGFGQALGSGNSHHSVYSPEPLHASDDICQVSAGWSYTALVTRGGRVELSGSVSGA
ADGCRDVWASEELLVLLRNKGGSSTEVQAWVPGSALQGEPLWVQNLVSGAKGQGEDEPSRESRMGTLPLL
PCARAYVTPEPPFCQPLAPELRVRQLELGAEHVLLLCAAGQVFSWGAGRHGQLGHGTLEAELEPRLLEAL
QGLRMAKVAAGGWHSVCLSETGDIYIWGWNESGQLALPTRSGTENKAEREEATELNEDGLKEELAVADAG
APAHFIAIQPFPALLDLPLGSDAVMASCGSRHTAVVTRTGELYTWGWGKYGQLGHKDSTSLDRPCCVEYF
VERQLEVRAVTCGPWNTYVYAMERDKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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