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Report for CCDS36384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36384.1 Public Mus musculus 11 Sgsh 23 108 98 CCDS HistoryNCBI Gene:27029Re-query CCDS DB by CCDS ID:36384.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005173.10 ENSMUSP00000005173.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005173.10Link to Ensembl Protein Viewer:ENSMUSP00000005173.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000005173Re-query CCDS DB by Protein ID:ENSMUSP00000005173
Original member Current member NCBI NM_018822.3 NP_061292.2 Accepted alive Link to Nucleotide Sequence:NM_018822.3Link to Protein Sequence:NP_061292.2Re-query CCDS DB by Nucleotide ID:NM_018822Re-query CCDS DB by Protein ID:NP_061292Link to BLAST:NP_061292.2

Chromosomal Locations for CCDS 36384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119346278 119346837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119347688 119347891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119349540 119349621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119349977 119350133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119350402 119350552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119350924 119351029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119352646 119352806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119355397 119355484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGCACTGCCCGGGACTGGCCTGCTGCACAATTCTGTTGGTCCTGGGACTCTGCGGCGCGCACTCGCGCA
ACGTGCTACTGATAGTTGCGGATGACGGAGGCTTTGAGAGTGGTGTATACAACAACACTGCCATCGCCAC
CCCTCACCTGGATGCCCTGTCCCGCCACAGCCTTATCTTCCGTAACGCCTTCACGTCTGTCAGCAGCTGT
TCCCCGAGCCGTGCCAGCCTCCTCACCGGCCTGCCCCAGCATCAGAATGGCATGTATGGGCTGCACCAGG
ATGTGCATCACTTCAACTCTTTTGACAAGGTACAGAGCCTTCCGCTGCTGCTCAACCAGGCCGGAGTGCG
CACAGGCATCATTGGGAAGAAGCACGTGGGTCCGGAGACGGTGTATCCCTTTGACTTTGCATTCACAGAG
GAGAACAGCTCTGTGATGCAGGTGGGGCGGAACATCACTAGAATTAAGCAACTGGTCCAGAAATTTCTGC
AGACTCAGGATGACAGGCCCTTCTTCCTGTACGTGGCTTTCCATGACCCGCACCGCTGTGGGCACTCTCA
GCCCCAGTATGGAACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGTGGAATGGGGTACATTCCAGACTGG
ACACCCCAGATCTACGACCCTCAGGATGTGATGGTGCCCTACTTTGTCCCGGACACACCAGCAGCCCGAG
CAGACCTAGCTGCTCAGTACACCACCATCGGGCGGATGGACCAAGGGGTAGGTCTGGTGCTCCAGGAGCT
GCGAGGTGCTGGTGTGCTGAACGACACCCTCATCATCTTCACATCTGACAATGGTATCCCTTTCCCCAGC
GGCAGGACCAACCTGTACTGGCCCGGTACAGCCGAGCCTTTGCTGGTGTCATCTCCAGAGCACCCACAGC
GCTGGGGCCAGGTCAGCGACGCCTACGTGAGCCTTCTAGACCTCACCCCTACCATCCTGGACTGGTTCTC
CATCCCGTACCCCAGCTATGCCATCTTTGGCTCAAAGACGATCCAGCTCACAGGCCGATCCCTCCTGCCG
GCGCTGGAGGCAGAGCCCCTTTGGGCCACTGTCTTCAGCAGCCAGAGCCACCACGAGGTCACCATGTCCT
ACCCGATGCGCTCGGTGTACCACCAGAACTTCCGCCTCATTCACAACCTGAGCTTCAAGATGCCATTTCC
CATCGACCAAGATTTCTATGTCTCGCCGACCTTCCAGGACCTCCTGAACCGAACCACCACAGGCCGGCCC
ACGGGCTGGTACAAGGACCTCCACCGTTACTACTACCGGGAACGCTGGGAACTCTACGACATCAGCCGGG
ACCCTCGAGAGACACGGAACCTGGCCGCTGACCCAGACTTGGCTCAAGTGCTGGAGATGCTGAAAGCTCA
GCTTGTCAAGTGGCAATGGGAGACACATGACCCCTGGGTGTGCGCCCCAGATGGAGTCCTGGAGGAAAAG
CTCACACCCCAGTGCCGACCGCTTCACAATGAACTCTGA

Translation (502 aa):
MHCPGLACCTILLVLGLCGAHSRNVLLIVADDGGFESGVYNNTAIATPHLDALSRHSLIFRNAFTSVSSC
SPSRASLLTGLPQHQNGMYGLHQDVHHFNSFDKVQSLPLLLNQAGVRTGIIGKKHVGPETVYPFDFAFTE
ENSSVMQVGRNITRIKQLVQKFLQTQDDRPFFLYVAFHDPHRCGHSQPQYGTFCEKFGNGESGMGYIPDW
TPQIYDPQDVMVPYFVPDTPAARADLAAQYTTIGRMDQGVGLVLQELRGAGVLNDTLIIFTSDNGIPFPS
GRTNLYWPGTAEPLLVSSPEHPQRWGQVSDAYVSLLDLTPTILDWFSIPYPSYAIFGSKTIQLTGRSLLP
ALEAEPLWATVFSSQSHHEVTMSYPMRSVYHQNFRLIHNLSFKMPFPIDQDFYVSPTFQDLLNRTTTGRP
TGWYKDLHRYYYRERWELYDISRDPRETRNLAADPDLAQVLEMLKAQLVKWQWETHDPWVCAPDGVLEEK
LTPQCRPLHNEL


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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