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Report for CCDS36863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36863.1 Public Mus musculus 14 Ncoa4 23 108 98 CCDS HistoryNCBI Gene:27057Re-query CCDS DB by CCDS ID:36863.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111994.9 ENSMUSP00000107625.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111994.9Link to Ensembl Protein Viewer:ENSMUSP00000107625.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111994Re-query CCDS DB by Protein ID:ENSMUSP00000107625
Original member Current member EBI ENSMUST00000163336.7 ENSMUSP00000126071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163336.7Link to Ensembl Protein Viewer:ENSMUSP00000126071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163336Re-query CCDS DB by Protein ID:ENSMUSP00000126071
Original member NCBI NM_001033988.2 NP_001029160.1 Updated not alive Link to Nucleotide Sequence:NM_001033988.2Link to Protein Sequence:NP_001029160.1Re-query CCDS DB by Nucleotide ID:NM_001033988Re-query CCDS DB by Protein ID:NP_001029160
Current member NCBI NM_001033988.3 NP_001029160.1 Accepted alive Link to Nucleotide Sequence:NM_001033988.3Link to Protein Sequence:NP_001029160.1Re-query CCDS DB by Nucleotide ID:NM_001033988Re-query CCDS DB by Protein ID:NP_001029160Link to BLAST:NP_001029160.1
Original member NCBI NM_019744.4 NP_062718.2 Updated not alive Link to Nucleotide Sequence:NM_019744.4Link to Protein Sequence:NP_062718.2Re-query CCDS DB by Nucleotide ID:NM_019744Re-query CCDS DB by Protein ID:NP_062718
Current member NCBI NM_019744.5 NP_062718.2 Accepted alive Link to Nucleotide Sequence:NM_019744.5Link to Protein Sequence:NP_062718.2Re-query CCDS DB by Nucleotide ID:NM_019744Re-query CCDS DB by Protein ID:NP_062718Link to BLAST:NP_062718.2

Chromosomal Locations for CCDS 36863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32170762 32170902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32172303 32172443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32172607 32172695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32172889 32172997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32173401 32173490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32174390 32174533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32175939 32176955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32177233 32177373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32177823 32177828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGAACACATCCCTGGAACAGAGTGGCTGCTACAGTAATAGAGAAACTCTTCTGAGGTGCAGTGATGCAA
GGAGGGAGCTGGAGCTTGCTATTGGTGGAGTACTTCGGGCTGAACAGCAAATTAAAGATAATTTACGAGA
GGTAAAAGCTCAGATTCACAGCTGCATAAGTCGCCACCTGGAATGCCTTCGGAGCCGAGAGGTGTGGCTC
AATGAACAGGTCGATCTCATCTATCAGCTTAAAGAGGAGACACTGCAGCAGCAGGCTCAGCAGCTCTATT
GGCTAATGGGCCAATTCAATTGTCTTATTCATCAACTGGAGTATACTCAGAACAAAGATCTTGCCAATCA
AGTCTCTGTGTGCTTGGAGAGACTGGGCAGTTTGGCCCTGAAGCCTGAAGATTCAACTGTCCTACTCTTT
GAAGCAGATACATCTGCTCTGCGCCAGACCATCACCACATTTGGATCCCTTAAGACCATTCAAATCCCTG
AGCATCTGATGGCTCACGCGAGCTCCTCAAGTATTGGGCCTTTCCTAGAGAAAAGAGGCTATATCCAGGT
GCCAGAGCAGAAGTCAGCATCCAGTGGCACAGCTGTATCTCTGAGTGAGTGGCTTCTTGTAAGCAAACCT
GCCATTGGTCTTCAGGCTCCTTATGTACCCAGTACCAACCCACAGGACTGGCTTATCCCAAAACAGACTT
CAGAGAATAGTCAGACTTCTGCCAGAGCCTGCAGTTTCTTCAGCGATGCCTGGGGCAATCTGAAGGGCTT
AGAAAATTGGCTCCTTAACAGTCATCAACAAGAAATTGCTGGAAAACCAAGTTCCTCAAAATGTAACAGC
CATTGTAGCACCAGTTCTTTCTCTCCTGAAGCTGAAAAGGCTGAAGATGTAGAGCTCCTTGATCAAGACG
AGCTGGACCTGTCTGATTGGTTGGTGACTCCTCAGGAACCCTGTGAGCTGGAGAAGCCTGTGGATGGCAG
CTGGGAAACCAGCGAGAAGTTTAAACTCTTGTTCCAGGTGTTCAGAGAGCCCTACAATGTGAGTGATTGG
CTTGTCAAGCCTGACTCCTGTACCAACTGTCAGGGCAACCAGCCTAGAGGTGTGGAGATTGAGAACCTGG
GCAATCTGAAATGCCTAAATGACCACTTGGAGGCCAAAAAATCAGTGTCGGTCCCCGGCGCAACAATCAG
CGACGGCTGGCTTGCCCAGAACCATCAGGACACATGGAAAGTAGAGGAAGTGTGTAAAGCCAACGAGCCC
TGCACCAGTTTTGCAGAGTGTGTGTGTGATGACAACTGTGAGAAGGAAGCCATGTATAAATGGCTTCTGA
AGAAGGGAGGAAAGGACAAGAATGGAATGCCTATGGAACCTAAATCTGAGCCTGAGAAACACAGAGAGTC
CCTGACACTGTGGCTCTGCCCTTCCAGAAATGAGCTAACAGAACAAGCTAAGGCACCCAAGGCTATGGCT
CCTGCTAGAATTGCTGATTCCTTCCACGTCATAAAGAATAGTTCCTTGTCAGAGTGGCTTATGGGGCCTA
CGTGCAAAGGAGGCCCTAAGGACGTGCCTAATACAGAGGAGAGAGCTGGCAAAGAGATGCTTCAAAGCTC
CATGGCCACTTCCTGGTGTCCCTTTAACACTGCCGACTGGGTTTTACCAGGAAAGAAAGTGGGAAGCCTC
AGCCAGTTCCCCTCTGGAGAAGATAAGTGGCTACTTCGAAAGAAGGCACAGGAAGCATTTCTTAATTCAC
CCCTACAAGAAGAACGTAACTTTCGCCCCGACTGTTACGGCCTCCCAGCAGTTTGTGATCTCTTTGCCTG
TATGCAGCTTAAGGTTGATAAAGAAAAATGGCTGTACAGAACTCCTCTACAGATGTGA

Translation (625 aa):
MNTSLEQSGCYSNRETLLRCSDARRELELAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWL
NEQVDLIYQLKEETLQQQAQQLYWLMGQFNCLIHQLEYTQNKDLANQVSVCLERLGSLALKPEDSTVLLF
EADTSALRQTITTFGSLKTIQIPEHLMAHASSSSIGPFLEKRGYIQVPEQKSASSGTAVSLSEWLLVSKP
AIGLQAPYVPSTNPQDWLIPKQTSENSQTSARACSFFSDAWGNLKGLENWLLNSHQQEIAGKPSSSKCNS
HCSTSSFSPEAEKAEDVELLDQDELDLSDWLVTPQEPCELEKPVDGSWETSEKFKLLFQVFREPYNVSDW
LVKPDSCTNCQGNQPRGVEIENLGNLKCLNDHLEAKKSVSVPGATISDGWLAQNHQDTWKVEEVCKANEP
CTSFAECVCDDNCEKEAMYKWLLKKGGKDKNGMPMEPKSEPEKHRESLTLWLCPSRNELTEQAKAPKAMA
PARIADSFHVIKNSSLSEWLMGPTCKGGPKDVPNTEERAGKEMLQSSMATSWCPFNTADWVLPGKKVGSL
SQFPSGEDKWLLRKKAQEAFLNSPLQEERNFRPDCYGLPAVCDLFACMQLKVDKEKWLYRTPLQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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