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Report for CCDS31986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31986.1 Public Homo sapiens 13 PCDH17 24 110 108 CCDS HistoryNCBI Gene:27253Re-query CCDS DB by CCDS ID:31986.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377918.8 ENSP00000367151.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377918.8Link to Ensembl Protein Viewer:ENSP00000367151.3Re-query CCDS DB by Nucleotide ID:ENST00000377918Re-query CCDS DB by Protein ID:ENSP00000367151
Original member Current member NCBI NM_001040429.3 NP_001035519.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040429.3Link to Protein Sequence:NP_001035519.1Re-query CCDS DB by Nucleotide ID:NM_001040429Re-query CCDS DB by Protein ID:NP_001035519Link to BLAST:NP_001035519.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035519.1 1159 O14917-1 1159 100% 0 0

Chromosomal Locations for CCDS 31986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 57632547 57635111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57666468 57666526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57666661 57666833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57724612 57725294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGTACCTTTCCATCTGTTGCTGCTTTCTTCTATGGGCCCCTGCCCTCACTCTCAAGAACCTCAACTACT
CCGTGCCGGAGGAGCAAGGGGCCGGCACGGTGATCGGGAACATCGGCAGGGATGCTCGACTGCAGCCTGG
GCTTCCGCCTGCAGAGCGCGGCGGCGGAGGGCGCAGCAAGTCGGGTAGCTACCGGGTGCTGGAGAACTCC
GCACCGCACCTGCTGGACGTGGACGCAGACAGCGGGCTCCTCTACACCAAGCAGCGCATCGACCGCGAGT
CCCTGTGCCGCCACAATGCCAAGTGCCAGCTGTCCCTCGAGGTGTTCGCCAACGACAAGGAGATCTGCAT
GATCAAGGTAGAGATCCAGGACATCAACGACAACGCGCCCTCCTTCTCCTCGGACCAGATCGAAATGGAC
ATCTCGGAGAACGCTGCTCCGGGCACCCGCTTCCCCCTCACCAGCGCACATGACCCCGACGCCGGCGAGA
ATGGGCTCCGCACCTACCTGCTCACGCGCGACGATCACGGCCTCTTTGGACTGGACGTTAAGTCCCGCGG
CGACGGCACCAAGTTCCCAGAACTGGTCATCCAGAAGGCTCTGGACCGCGAGCAACAGAATCACCATACG
CTCGTGCTGACTGCCCTGGACGGTGGCGAGCCTCCACGTTCCGCCACCGTACAGATCAACGTGAAGGTGA
TTGACTCCAACGACAACAGCCCGGTCTTCGAGGCGCCATCCTACTTGGTGGAACTGCCCGAGAACGCTCC
GCTGGGTACAGTGGTCATCGATCTGAACGCCACCGACGCCGATGAAGGTCCCAATGGTGAAGTGCTCTAC
TCTTTCAGCAGCTACGTGCCTGACCGCGTGCGGGAGCTCTTCTCCATCGACCCCAAGACCGGCCTAATCC
GTGTGAAGGGCAATCTGGACTATGAGGAAAACGGGATGCTGGAGATTGACGTGCAGGCCCGAGACCTGGG
GCCTAACCCTATCCCAGCCCACTGCAAAGTCACGGTCAAGCTCATCGACCGCAACGACAATGCGCCGTCC
ATCGGTTTCGTCTCCGTGCGCCAGGGGGCGCTGAGCGAGGCCGCCCCTCCCGGCACCGTCATCGCCCTGG
TGCGGGTCACTGACCGGGACTCTGGCAAGAACGGACAGCTGCAGTGTCGGGTCCTAGGCGGAGGAGGGAC
GGGCGGCGGCGGGGGCCTGGGCGGGCCCGGGGGTTCCGTCCCCTTCAAGCTTGAGGAGAACTACGACAAC
TTCTACACGGTGGTGACTGACCGCCCGCTGGACCGCGAGACACAAGACGAGTACAACGTGACCATCGTGG
CGCGGGACGGGGGCTCTCCTCCCCTCAACTCCACCAAGTCGTTCGCGATCAAGATTCTAGACGAGAACGA
CAACCCGCCTCGGTTCACCAAAGGGCTCTACGTGCTTCAGGTGCACGAGAACAACATCCCGGGAGAGTAC
CTGGGCTCTGTGCTCGCCCAGGATCCCGACCTGGGCCAGAACGGCACCGTATCCTACTCTATCCTGCCCT
CGCACATCGGCGACGTGTCTATCTACACCTATGTGTCTGTGAATCCCACGAACGGGGCCATCTACGCCCT
GCGCTCCTTTAACTTCGAGCAGACCAAGGCTTTTGAGTTCAAGGTGCTTGCTAAGGACTCGGGGGCGCCC
GCGCACTTGGAGAGCAACGCCACGGTGAGGGTGACAGTGCTAGACGTGAATGACAACGCGCCAGTGATCG
TGCTCCCCACGCTGCAGAACGACACCGCGGAGCTGCAGGTGCCGCGCAACGCTGGCCTGGGCTATCTGGT
GAGCACTGTGCGCGCCCTAGACAGCGACTTCGGCGAGAGCGGGCGTCTCACCTACGAGATCGTGGACGGC
AACGACGACCACCTGTTTGAGATCGACCCGTCCAGCGGCGAGATCCGCACGCTGCACCCTTTCTGGGAGG
ACGTGACGCCCGTGGTGGAGCTGGTGGTGAAGGTGACCGACCACGGCAAGCCTACCCTGTCCGCAGTGGC
CAAGCTCATCATCCGCTCGGTGAGCGGATCCCTTCCCGAGGGGGTACCACGGGTGAATGGCGAGCAGCAC
CACTGGGACATGTCGCTGCCGCTCATCGTGACTCTGAGCACTATCTCCATCATCCTCCTAGCGGCCATGA
TCACCATCGCCGTCAAGTGCAAGCGCGAGAACAAGGAGATCCGCACTTACAACTGCCGCATCGCCGAGTA
CAGCCACCCGCAGCTGGGTGGGGGCAAGGGCAAGAAGAAGAAGATCAACAAAAATGATATCATGCTGGTG
CAGAGCGAAGTGGAGGAGAGGAACGCCATGAACGTCATGAACGTGGTGAGCAGCCCCTCCCTGGCCACCT
CCCCCATGTACTTCGACTACCAGACCCGCCTGCCCCTCAGCTCGCCCCGGTCGGAGGTGATGTATCTCAA
ACCGGCCTCCAACAACCTGACTGTCCCTCAGGGGCACGCGGGCTGCCACACCAGCTTCACCGGACAAGGG
ACTAATGCAAGCGAGACCCCTGCCACTCGGATGTCCATAATTCAGACAGACAATTTTCCCGCAGAGCCCA
ATTACATGGGCAGCAGGCAGCAGTTTGTTCAAAGTAGCTCCACGTTTAAGGACCCAGAAAGAGCCAGCCT
GAGAGACAGTGGGCACGGGGACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGCTCCTGCTGT
GACATGTCTGTTAGGGAGGCACTCAAGATGAAAACTACTTCAACTAAAAGCCAACCACTTGAACAAGAAC
CAGAAGAGTGTGTTAATTGCACAGATGAATGCCGAGTGCTTGGTCATTCTGACAGGTGCTGGATGCCACA
GTTCCCTGCAGCCAATCAGGCTGAAAATGCAGATTACCGCACAAATCTCTTTGTACCTACAGTTGAAGCT
AATGTTGAGACTGAGACTTACGAAACTGTGAATCCCACTGGGAAAAAGACTTTTTGTACATTTGGAAAAG
ACAAGCGAGAGCACACTATTCTCATTGCCAACGTTAAACCTTATTTAAAAGCCAAACGTGCCCTGAGCCC
TCTCCTCCAAGAGGTCCCCTCAGCATCAAGCAGCCCAACCAAGGCGTGCATCGAGCCTTGCACCTCAACA
AAAGGCTCCCTGGATGGCTGTGAAGCAAAACCAGGAGCCCTGGCTGAAGCAAGCAGTCAGTACTTGCCCA
CTGACAGTCAATATCTGTCACCTAGTAAGCAACCAAGAGACCCTCCCTTCATGGCTTCCGATCAGATGGC
AAGGGTCTTTGCAGATGTGCATTCCAGAGCCAGCCGGGATTCCAGTGAGATGGGTGCTGTTCTTGAGCAG
CTTGACCACCCCAACAGGGATCTGGGCAGAGAGTCTGTGGATGCAGAGGAAGTTGTGAGAGAAATTGATA
AGCTTTTGCAAGACTGCCGGGGAAACGACCCTGTGGCTGTGAGAAAGTGA

Translation (1159 aa):
MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGRDARLQPGLPPAERGGGGRSKSGSYRVLENS
APHLLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVEIQDINDNAPSFSSDQIEMD
ISENAAPGTRFPLTSAHDPDAGENGLRTYLLTRDDHGLFGLDVKSRGDGTKFPELVIQKALDREQQNHHT
LVLTALDGGEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNGEVLY
SFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAPS
IGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGGGLGGPGGSVPFKLEENYDN
FYTVVTDRPLDRETQDEYNVTIVARDGGSPPLNSTKSFAIKILDENDNPPRFTKGLYVLQVHENNIPGEY
LGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNFEQTKAFEFKVLAKDSGAP
AHLESNATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVSTVRALDSDFGESGRLTYEIVDG
NDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQH
HWDMSLPLIVTLSTISIILLAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGKGKKKKINKNDIMLV
QSEVEERNAMNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHTSFTGQG
TNASETPATRMSIIQTDNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCC
DMSVREALKMKTTSTKSQPLEQEPEECVNCTDECRVLGHSDRCWMPQFPAANQAENADYRTNLFVPTVEA
NVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEVPSASSSPTKACIEPCTST
KGSLDGCEAKPGALAEASSQYLPTDSQYLSPSKQPRDPPFMASDQMARVFADVHSRASRDSSEMGAVLEQ
LDHPNRDLGRESVDAEEVVREIDKLLQDCRGNDPVAVRK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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