NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22639.1 Public Mus musculus 8 Tango6 23 108 98 CCDS HistoryNCBI Gene:272538Re-query CCDS DB by CCDS ID:22639.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048359.4 ENSMUSP00000043953.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048359.4Link to Ensembl Protein Viewer:ENSMUSP00000043953.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048359Re-query CCDS DB by Protein ID:ENSMUSP00000043953
Original member NCBI NM_173037.1 NP_766625.1 Updated not alive Link to Nucleotide Sequence:NM_173037.1Link to Protein Sequence:NP_766625.1Re-query CCDS DB by Nucleotide ID:NM_173037Re-query CCDS DB by Protein ID:NP_766625
Current member NCBI NM_173037.2 NP_766625.1 Accepted alive Link to Nucleotide Sequence:NM_173037.2Link to Protein Sequence:NP_766625.1Re-query CCDS DB by Nucleotide ID:NM_173037Re-query CCDS DB by Protein ID:NP_766625Link to BLAST:NP_766625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766625.1 1079 Q8C3S2-1 1079 100% 0 0

Chromosomal Locations for CCDS 22639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106683153 106683255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106688652 106689292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106692567 106692683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106695449 106695596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106696604 106696740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106698956 106699118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106700165 106700247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106716609 106716721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106717970 106718146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106720654 106720783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106725094 106725285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106735686 106735820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106742013 106742471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106747294 106747351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106781694 106781834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106807041 106807192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106818456 106818569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106850179 106850355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3240 nt):
ATGGCGGCCTCCGGACCGGCGGCGGCTGCGCCGAGTGGCGTTCTGGTGACATGTGGTCTGGAGCAGGTTC
TGGAAGCGCTGAAGTTGCTGCTGAGCCCGGGAGGATCAGGCTCAAGTTCACTACAGAACACAAAGCACGA
TGTCCTGCTGCAGACTCTAAAATCTAACCTGTCTGCGTTGGAGGCCAAGTTTCTGAAGGATGCTCAGTGG
AAGAAACTCAAAGCCCTAAGAGATGAACTTGCTGATAAGGCTGAATGGCCGCAGAGCTCCGAGGATATCA
CTTGGAGTTTCACCTCTCAAACCTTGTTGCTGCTGCTGTGTCTGAAGGAAGTCCTGGCCCGCCTCGTAGC
TGATTTCAATCCTGGCAAACCTAACCCCAGGACTCCAGAAGCCGCCCCTGCCCTCAGTCCAGATACACTC
AGCGTCTCCCAACAGAAGACCTTCCAGTCTGTTCTGCAGTTTGTAGTCACCTTGGGCGTCTGCCCCTACC
TCATTCCTGGCGTGGGAGTCCCTCTGAGAGACAGGACTGAGTTTGGAGCTGTTGTTCAGGATGTTGTACG
TCTGGAGGCTGCCCCCCATGCCACCCGGAGACTGTACATCTGCTGCAGGGTCCTTCTCGACCTGGCGCAG
CATGCATCTCTGGGGAGCTTGATTTTTTGCCGCCATTTTGGGGATATTGCAGCAGGTCTGTGCCAGCTGG
GATTCTGCCCAACCAAAAGAAAACCACCAGGACCTGTGGAAGAGGTTTTAACAGAAGAGGAAAGAACCTT
ATCAAGGCGGGCCTTGCGAGACATCTTGGATCAAGTCTATCAACCATTGGCTGTCCGGGAATTACTTACC
CTCCAGGGAGGACCACGCCAGCCCTGTACAGATGTGAAGACACAGCTAAGGTGTCGGGCCCAGGCCCCAG
CATGGCTCCGCCGTCTATGTGGGCAGCTGCTCTCTGAGAGGTTGATGAGACCCAACGGCGTTCAGGCAGT
AGTGCGGGGCATTCTGGAAGGAGCAGGTGCGGGCGCGGCTGGTGGGAGCGATGCTGAGGCCACAGCTGCC
GACTGGAGGAAGTGTGACTTGATTGCAAAGATCCTGGCCTCTTGTCCCCAGCAGTCCCTTTCCCCAGAGA
GCTACTACAAGGACATCTGCCCGCAGATTCTGGACTTATTCCACCTTCAAGATAAATTGACAGCACGGCA
GTTTCAGAGAGTGGCCACTACCACCTTCATAACTCTGTCCAGGGAGCGCCCAGAACTGGCAGCAAAGTAT
TTGCTTCAGCCCATGTTAGCACCTCTGCAGCGCTGTTTGAGCACAGCAGAGATTCCAGAGAGTGACATGG
TGCCAGGAGCTATTTTGGTGACTGAAGAGGAACTTAGTCGGTGTGTTGAAGATGTGTTTAAGGTGTATGT
GGTGGCAAATGAACCTGTCCCAGTGTTGCTGGACTCGCTGCTTCCGCTCCTCCGGGTGTTCTTTTCTCTC
TACTGTTTTACCCAGCAGAGTGTGTCTCACATAAGGTCACTTTGCCAAGAGATCTTGTTATGGATTCTGG
TGAAGCTGGAAAGGAAGAAGGCAATCGCCAGCCTGAAAGGATTTTCGGGGTTGGACAAAACCGTGCCCAC
TCTCCACCCTCAGTGTCAGTTTAGAGCCGCTACGCACGGTGGCATCGTGATTACCGCCAAAGAGGCCATT
AGCGATGATGAAGATGAAGCCCTGTACCAGAAGGTGTCTTCAGAGCAGAGCCAGGTGGAGCACCTTGGGG
ACTTGCTGCTGCACTGCCAGCAGTGTGGGTTGGCAGGAGATTTCTTCATCTTTTGTCTGAAGGAGTTGTC
TCACCTGCTGGAGGACAGAGAAGCAGAGTTCACTCCCAAGCCCTCCTGCTATGCGAGCCTCCTTGAGTTA
GAGCACCACCAGACTCTGCTCATAGAAGACCAGGAGCGGAAGCTGCAGGTTCTGCAGCTGCTGGCCGTTC
TGTGTGAGAAGATGTCTGAGCAGATATTCACACACGTCACTCAGGTAGTGGACTTTGTAGCAGCAACACT
GCAGAGAGCATGTGCAGGCCTGGCTCATGAGGCAGAGAGCGCCGTGGGATCCCAAACCCTGAGCATGTCC
ATGGGGCTGGTGGCTGTCATGCTAGGAGGAGCTGTTCAGTTGAAGTCAAGTGATTTTGCAGTCCTGAAGC
AGCTGCTGCCTCTGTTGGAGAGGGTCTCTAACACATACCCTGACCCTGTCATCCAAGAACTCGCCGCCGA
TCTCCGAATTACCATCTCCACTCATGGAGCCTTCTCCACTGATGCCGTCAGCACAGCAGCCCAGAGTACC
CTAAACCAAAAGGACCCGGGACAGAAAATAGAAGAACAGCGACAAACCAGTCCTGACATATCTACAGAAG
GAGCTCAGAAGCCCCCCAGAACAGGCCAAGGTTCCAGTGGGCCCTGCACTGCCACAAGCCAGCCACCTGG
AAGCATAACCACACAACAGTTCCGGGAGGTTCTCTTATCGGCCTGTGATCCCGAGGTTCCAACCCGGGCT
GCTGCCCTCCGCACCCTTGCCCGCTGGGTAGAGCAGAGGGAAGCGAGGGCCCTGGAGGAACAAAAGAAGC
TTCTCCAGATATTCCTGGAGAACTTGGAGCATGAAGACTCTTTTGTGTATCTATCTGCAATTCAGGGGAT
TGCCCTTCTTTCAGATGTGTACCCTGAAGAAATCTTGGTTGATCTGTTGGCCAAATATGACAGTGGGAAA
GACAAGCACACTCCTGAGACCAGAATGAAGGTTGGCGAGGTCCTGATGCGAGTTGTCAGAGCACTGGGGG
ACATGGTCTCGAAATACCGGGAACCTTTGATCCACACCTTCCTGCGGGGAGTGAGAGATCCAGATGCTGC
ACACAGGGCCAGCAGCTTAGCCAACCTGGGAGAGCTGTGCCAGTGCCTGCACTTCCTGCTGGGCCCCGTG
GTTCATGAGGTGACAGCCTGCCTGATTGCTGTGGCTAAGACAGACAATGATGTTCAAGTGCGCAGAGCTG
CAGTCCACGTAGTTGTGCTGCTGCTTCGGGGACTCAGCCAGAAAGCAACAGAGGTGCTGAGCGACGTCCT
CAGGGATCTCTATCACTTGCTGAAGCACGTGGTGCGCTTGGAACCTGATGACGTCGCCAAGCTGCATGCC
CAGCTGGCCCTGGAGGAGCTCGATGAGATCATGAGGAACTTCCTGTTCCCGCCCCAGAAGCTGGAGAAGA
AGATTGTGGTCCTGCCATAG

Translation (1079 aa):
MAASGPAAAAPSGVLVTCGLEQVLEALKLLLSPGGSGSSSLQNTKHDVLLQTLKSNLSALEAKFLKDAQW
KKLKALRDELADKAEWPQSSEDITWSFTSQTLLLLLCLKEVLARLVADFNPGKPNPRTPEAAPALSPDTL
SVSQQKTFQSVLQFVVTLGVCPYLIPGVGVPLRDRTEFGAVVQDVVRLEAAPHATRRLYICCRVLLDLAQ
HASLGSLIFCRHFGDIAAGLCQLGFCPTKRKPPGPVEEVLTEEERTLSRRALRDILDQVYQPLAVRELLT
LQGGPRQPCTDVKTQLRCRAQAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEATAA
DWRKCDLIAKILASCPQQSLSPESYYKDICPQILDLFHLQDKLTARQFQRVATTTFITLSRERPELAAKY
LLQPMLAPLQRCLSTAEIPESDMVPGAILVTEEELSRCVEDVFKVYVVANEPVPVLLDSLLPLLRVFFSL
YCFTQQSVSHIRSLCQEILLWILVKLERKKAIASLKGFSGLDKTVPTLHPQCQFRAATHGGIVITAKEAI
SDDEDEALYQKVSSEQSQVEHLGDLLLHCQQCGLAGDFFIFCLKELSHLLEDREAEFTPKPSCYASLLEL
EHHQTLLIEDQERKLQVLQLLAVLCEKMSEQIFTHVTQVVDFVAATLQRACAGLAHEAESAVGSQTLSMS
MGLVAVMLGGAVQLKSSDFAVLKQLLPLLERVSNTYPDPVIQELAADLRITISTHGAFSTDAVSTAAQST
LNQKDPGQKIEEQRQTSPDISTEGAQKPPRTGQGSSGPCTATSQPPGSITTQQFREVLLSACDPEVPTRA
AALRTLARWVEQREARALEEQKKLLQIFLENLEHEDSFVYLSAIQGIALLSDVYPEEILVDLLAKYDSGK
DKHTPETRMKVGEVLMRVVRALGDMVSKYREPLIHTFLRGVRDPDAAHRASSLANLGELCQCLHFLLGPV
VHEVTACLIAVAKTDNDVQVRRAAVHVVVLLLRGLSQKATEVLSDVLRDLYHLLKHVVRLEPDDVAKLHA
QLALEELDEIMRNFLFPPQKLEKKIVVLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH