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Report for CCDS30399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30399.1 Public Mus musculus X Armcx6 23 108 98 CCDS HistoryNCBI Gene:278097Re-query CCDS DB by CCDS ID:30399.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052431.11 ENSMUSP00000057277.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052431.11Link to Ensembl Protein Viewer:ENSMUSP00000057277.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052431Re-query CCDS DB by Protein ID:ENSMUSP00000057277
Original member Current member EBI ENSMUST00000113194.7 ENSMUSP00000108819.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113194.7Link to Ensembl Protein Viewer:ENSMUSP00000108819.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113194Re-query CCDS DB by Protein ID:ENSMUSP00000108819
Original member Current member NCBI NM_001007578.2 NP_001007579.1 Accepted alive Link to Nucleotide Sequence:NM_001007578.2Link to Protein Sequence:NP_001007579.1Re-query CCDS DB by Nucleotide ID:NM_001007578Re-query CCDS DB by Protein ID:NP_001007579Link to BLAST:NP_001007579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007579.1 301 Q8K3A6 301 100% 0 0

Chromosomal Locations for CCDS 30399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134749175 134750080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGGTCGGGCCCGGGAAATGGGTTGGATGGCAGCCGGACTCATGATTGGAGCTGGTGCCTGTTACTGCA
TGTACAAACTGACCATGGGAAGAAGTGAGGGGAACGAGCTGGAGGACGAGGAGGAAGATGAATGGGAAGA
TGGACAGGATCTGGATGAAGAGGAAGCAGACAATTGGTTTGATTTCACAGCAATGGCTCGACCCTGGAGT
GAGGATGGGGACTGGGATGAACCTGGGGCCCCAGGTGGGACTGAGGACAGACGGTCAGGTGGTGGAAAGG
CAAACAGAGCACACCCAATCAAGCAGCGGCCATTCCCTTATGAACATAAAAACATATGGGGTGAACAGAG
CTTTAAATCCTTCACTTGTATTCTTGACCTGAACAAGTGTGTTTCCACTCAAAGAAAGAAAAGGTTCACG
AAGAACATAAATGCTGGCTTTTCCCTTAGCCCCAATATCAGTAAACATCTGGCCAGCCTATCAGTGGTTG
GAAACAGGAGTCCCACCCCCCATCCCACTGTGAGGGAGAAGGCTCTGTTTGTCCCTGAAAACCCAAACAG
CAGCCTTGAAAATCAGGGCCAGATTAAGATGTCCATTGATGAAGTGTGTCGAGAGACACTGTTGTGTTGC
TGCAAGTCTTTTCTGCAGCAGGCAGGATTAAGTCTGCTAATAAGCATGACAGTCATTAATAACATGCTTG
CCAAGTCTGTTTCAGACCTGAAGTTTCCTTTGCTATCCAAGGGGAGTGGATGTGCAGAGGTGCGGGGCTT
GGAAGAGCTGATGAGTTTGTCTGAAAAGCCAGTGCTGGTGGGGGAAGCACTGGCTGCCCAAATGCTCTCC
TCCTTCATGTGCCTCTTTACCAGAAGTGGGAGCAGAGAGATGCTTGTGGAAGCCATCTCCCCTTAA

Translation (301 aa):
MGRAREMGWMAAGLMIGAGACYCMYKLTMGRSEGNELEDEEEDEWEDGQDLDEEEADNWFDFTAMARPWS
EDGDWDEPGAPGGTEDRRSGGGKANRAHPIKQRPFPYEHKNIWGEQSFKSFTCILDLNKCVSTQRKKRFT
KNINAGFSLSPNISKHLASLSVVGNRSPTPHPTVREKALFVPENPNSSLENQGQIKMSIDEVCRETLLCC
CKSFLQQAGLSLLISMTVINNMLAKSVSDLKFPLLSKGSGCAEVRGLEELMSLSEKPVLVGEALAAQMLS
SFMCLFTRSGSREMLVEAISP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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