NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39436.1 Public Mus musculus 6 Fam3c 23 108 98 CCDS HistoryNCBI Gene:27999Re-query CCDS DB by CCDS ID:39436.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165576.7 ENSMUSP00000127709.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165576.7Link to Ensembl Protein Viewer:ENSMUSP00000127709.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165576Re-query CCDS DB by Protein ID:ENSMUSP00000127709
Original member Current member NCBI NM_138587.4 NP_613053.3 Accepted alive Link to Nucleotide Sequence:NM_138587.4Link to Protein Sequence:NP_613053.3Re-query CCDS DB by Nucleotide ID:NM_138587Re-query CCDS DB by Protein ID:NP_613053Link to BLAST:NP_613053.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613053.3 227 Q91VU0 227 100% 0 0

Chromosomal Locations for CCDS 39436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 22308449 22308538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22309327 22309453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22318934 22319018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22321329 22321379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22322290 22322348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22328555 22328678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22329579 22329608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22339273 22339377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22343266 22343278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCCGTGGCAGTATTCTTACTGACCTTCTATGTTATTT
CTCAAGTATTTGAAATTAAAATGGATGCAAGTTTAGGAAATCTATTTGCTCGATCCGCGCTGGACTCAGC
CATTCGTTCTACGAAACCTCCGAGGTACAAGTGTGGGATCTCAAAGGCGTGCCCAGAGAAGCATTTTGCT
TTTAAGATGGCTAGTGGAGCAGCCAATGTCGTGGGACCCAAGATCTGCCTGGAGGACAATGTTTTGATGA
GTGGTGTGAAGAATAATGTCGGAAGAGGAATCAATATTGCCTTGGTAAATGGGAAAACAGGGGAAGTAAT
AGACACCAAATTTTTTGACATGTGGGGAGGAGATGTGGCACCATTCATTGAGTTTTTGAAGACCATACAA
GACGGAACAGTAGTGCTAATGGCTACATACGATGATGGAGCAACCAAACTCACGGATGAGGCACGGCGGC
TCATTGCTGAACTGGGCAGCACTTCGATCACCAGTCTTGGTTTCCGAGATAACTGGGTCTTCTGTGGTGG
GAAGGGCATTAAGACAAAGAGTCCCTTTGAACAGCACATAAAGAACAATAAGGAAACGAACAAGTACGAG
GGATGGCCTGAGGTGGTGGAGATGGAAGGATGTATCCCCCAGAAGCAAGACTGA

Translation (227 aa):
MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDASLGNLFARSALDSAIRSTKPPRYKCGISKACPEKHFA
FKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINIALVNGKTGEVIDTKFFDMWGGDVAPFIEFLKTIQ
DGTVVLMATYDDGATKLTDEARRLIAELGSTSITSLGFRDNWVFCGGKGIKTKSPFEQHIKNNKETNKYE
GWPEVVEMEGCIPQKQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH