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Report for CCDS38449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38449.1 Public Mus musculus 3 Gfm1 23 108 98 CCDS HistoryNCBI Gene:28030Re-query CCDS DB by CCDS ID:38449.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077271.8 ENSMUSP00000076503.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077271.8Link to Ensembl Protein Viewer:ENSMUSP00000076503.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077271Re-query CCDS DB by Protein ID:ENSMUSP00000076503
Original member Current member NCBI NM_138591.2 NP_613057.2 Accepted alive Link to Nucleotide Sequence:NM_138591.2Link to Protein Sequence:NP_613057.2Re-query CCDS DB by Nucleotide ID:NM_138591Re-query CCDS DB by Protein ID:NP_613057Link to BLAST:NP_613057.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613057.2 751 Q8K0D5 751 100% 0 0

Chromosomal Locations for CCDS 38449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 67430239 67430322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67431650 67431802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67433355 67433487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67435505 67435709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67438546 67438662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67440102 67440252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67443555 67443709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67444773 67444857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67449679 67449816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67451299 67451400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67453670 67453726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67456573 67456710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67457888 67457970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67467807 67467969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67469466 67469610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67473463 67473623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67474553 67474606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67474719 67474850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGCGGCTGCTGCGGGTCGCCGCAGCCCTGGGGCGTGGACCGTTCCCTCGGGTCCCTGCAGTCCTGGGCT
GGCAGGGGAAGCAGGCTGATTGGAAGACCCGCCGATGGTGTTCGTCAGGGCCAGTTCCCAATGAAAAAAT
ACGGAACATTGGGATCTCAGCTCACATTGATTCTGGGAAGACGACGCTAACAGAACGGGTGCTATACTAC
ACTGGCAGGATTGCCACGATGCACGAGGTGAAAGGTAAAGATGGAGTTGGCGCTGTCATGGATTCCATGG
AGCTGGAGAGGCAGCGAGGGATCACGATCCAGTCAGCAGCTACGTATACCATGTGGAAAGACATCAATAT
CAACATCATAGACACGCCAGGCCACGTGGACTTTACCATAGAAGTGGAAAGAGCCCTGCGGGTCCTGGAC
GGTGCAGTCCTTGTTCTCTGTGCGGTTGGCGGAGTCCAGTGCCAGACCATGACAGTCAGTCGTCAGATGA
AGCGCTACAACGTTCCCTTTTTAACCTTCATTAACAAACTGGACCGAATGGGCTCTAACCCATCCAGGGC
CCTCCAACAAATGAGATCTAAACTAAATCACAATGCTGCATTTGTACAAATACCCATTGGTTTAGAGGGT
GATTTTAAGGGAATTATAGACCTCATTGAAGAACGAGCTATTTACTTTGATGGAGACTTTGGTCAGATTG
TCCGATATGACGAGATTCCGGCTGGATTGCGGGCCGCAGCCGCTGACCACCGGCAGGAGCTCATTGAGTG
CGTTGCTAACTCAGATGAGCAGCTTGGTGAGCTCTTCCTGGAAGAAAAGATCCCCTCAGTTTCCGACTTA
AAGCGAGCAATCCGGAGAGCTACTCTGAGTCGATCCTTCACTCCTGTATTTTTGGGAAGTGCTTTGAAAA
ACAAAGGAGTTCAACCTCTTTTGGACGCTGTTTTAGAATACCTGCCCAATCCATCTGAGGTCCAGAATTA
CGCTATACTCAATCAGAATGACTCAAAAGAGAAGACCAAAATCTTAATGAACCCCCAAAGAGATGATTCG
CACCCATTTGTAGGCCTGGCTTTTAAACTGGAGGCGGGCCGTTTTGGACAGCTGACTTATGTCCGAAATT
ATCAAGGTGAACTGAAGAAGGGAAGCACCATCTACAACACGAGGACCGGGAAGAAAGTGCGCGTGCAGCG
GCTAGTGCGCATGCACGCCGACATGATGGAGGATGTTGAAGAAGTATATGCTGGAGACATCTGTGCATTG
TTTGGCATTGACTGTGCAAGTGGAGATACATTCACAAACAAAGATAACAGTGACCTTTCTATGGAATCGA
TTCATGTTCCTGAGCCTGTCATTTCAATAGCAATGAGGCCTTCTAACAAGAATGATCTGGAGAAATTTTC
CAAAGGTATTGGCAGGTTTACACGGGAAGACCCCACATTTAAAGTCCACTTTGACCCTGAGAGCAAGGAG
ACCATTGTGTCAGGGATGGGAGAGCTGCACCTGGAAATCTATGCTCAGAGAATGGAGAGAGAATATGGCT
GCCCTTGTATCACAGGAAAACCCAAAGTAGCCTTTAGAGAGACCATTGTTGCCCCAGTGCCGTTTGATTT
TACACATAAAAAGCAGTCGGGTGGTGCCGGCCAGTTTGGAAAAGTAATAGGAGTGCTGGAGCCCTTGCCC
CCAGAGGACTACACGAAGTTGGAGTTTTCTGATGAGACATTTGGGTCCAATGTTCCAAAGCAGTTTGTCC
CCGCTGTTGAAAAGGGGTTTCTGGATGCCTGCGAAAAAGGCCCTCTTTCTGGTCACAAGCTTTCTGGGCT
ACGGTTTGTTCTGCAAGATGGAGCACACCACATGGTTGATTCGAATGAAATCTCTTTCATCCGAGCTGGA
GAAGGTGCTCTTAAACAAGCCTTGGCAAATGGCACACTATGTATTATTGAGCCTATTATGTCTGTGGAAG
TTATAGCCCCCAATGAATTCCAGGGAACAGTGTTCGCAGGGATTAACCGGCGGCATGGAGTGATTACAGG
GCAGGACGGCATTGAGGACTACTTCACACTGTATGCAGATGTTCCCCTAAATAATATGTTTGGTTATTCC
ACTGAGCTTAGGTCTTGCACAGAGGGAAAAGGAGAGTACACGATGGAGTACTGCAGGTACCAGCCGTGTT
CACCATCCACACAGGAAGAGCTCATCAATAAGTATTTGGAAGCTACAGGTCAGCTTCCCGTAAAAAAAGG
GAAAGCCAAGAACTGA

Translation (751 aa):
MRLLRVAAALGRGPFPRVPAVLGWQGKQADWKTRRWCSSGPVPNEKIRNIGISAHIDSGKTTLTERVLYY
TGRIATMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDININIIDTPGHVDFTIEVERALRVLD
GAVLVLCAVGGVQCQTMTVSRQMKRYNVPFLTFINKLDRMGSNPSRALQQMRSKLNHNAAFVQIPIGLEG
DFKGIIDLIEERAIYFDGDFGQIVRYDEIPAGLRAAAADHRQELIECVANSDEQLGELFLEEKIPSVSDL
KRAIRRATLSRSFTPVFLGSALKNKGVQPLLDAVLEYLPNPSEVQNYAILNQNDSKEKTKILMNPQRDDS
HPFVGLAFKLEAGRFGQLTYVRNYQGELKKGSTIYNTRTGKKVRVQRLVRMHADMMEDVEEVYAGDICAL
FGIDCASGDTFTNKDNSDLSMESIHVPEPVISIAMRPSNKNDLEKFSKGIGRFTREDPTFKVHFDPESKE
TIVSGMGELHLEIYAQRMEREYGCPCITGKPKVAFRETIVAPVPFDFTHKKQSGGAGQFGKVIGVLEPLP
PEDYTKLEFSDETFGSNVPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHMVDSNEISFIRAG
EGALKQALANGTLCIIEPIMSVEVIAPNEFQGTVFAGINRRHGVITGQDGIEDYFTLYADVPLNNMFGYS
TELRSCTEGKGEYTMEYCRYQPCSPSTQEELINKYLEATGQLPVKKGKAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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