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Report for CCDS53403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53403.1 Public Homo sapiens 1 NIT1 24 110 108 CCDS HistoryNCBI Gene:4817Re-query CCDS DB by CCDS ID:53403.1Re-query CCDS DB by GeneID:4817See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392190.9 ENSP00000376028.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392190.9Link to Ensembl Protein Viewer:ENSP00000376028.5Re-query CCDS DB by Nucleotide ID:ENST00000392190Re-query CCDS DB by Protein ID:ENSP00000376028
Original member Current member NCBI NM_001185094.2 NP_001172023.1 Accepted alive Link to Nucleotide Sequence:NM_001185094.2Link to Protein Sequence:NP_001172023.1Re-query CCDS DB by Nucleotide ID:NM_001185094Re-query CCDS DB by Protein ID:NP_001172023Link to BLAST:NP_001172023.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172023.1 291 Q86X76-2 291 100% 0 0

Chromosomal Locations for CCDS 53403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161119144 161119388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119509 161119612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161119819 161119952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161120107 161120232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161120499 161120765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCTATCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGCCAGGTAACATCGACGCCAGACA
AGCAACAGAACTTTAAAACATGTGCTGAGCTGGTTCGAGAGGCTGCCAGACTGGGTGCCTGCCTGGCTTT
CCTGCCTGAGGCATTTGACTTCATTGCACGGGACCCTGCAGAGACGCTACACCTGTCTGAACCACTGGGT
GGGAAACTTTTGGAAGAATACACCCAGCTTGCCAGGGAATGTGGACTCTGGCTGTCCTTGGGTGGTTTCC
ATGAGCGTGGCCAAGACTGGGAGCAGACTCAGAAAATCTACAATTGTCACGTGCTGCTGAACAGCAAAGG
GGCAGTAGTGGCCACTTACAGGAAGACACATCTGTGTGACGTAGAGATTCCAGGGCAGGGGCCTATGTGT
GAAAGCAACTCTACCATGCCTGGGCCCAGTCTTGAGTCACCTGTCAGCACACCAGCAGGCAAGATTGGTC
TAGCTGTCTGCTATGACATGCGGTTCCCTGAACTCTCTCTGGCATTGGCTCAAGCTGGAGCAGAGATACT
TACCTATCCTTCAGCTTTTGGATCCATTACAGGCCCAGCCCACTGGGAGGTGTTGCTGCGGGCCCGTGCT
ATCGAAACCCAGTGCTATGTAGTGGCAGCAGCACAGTGTGGACGCCACCATGAGAAGAGAGCAAGTTATG
GCCACAGCATGGTGGTAGACCCCTGGGGAACAGTGGTGGCCCGCTGCTCTGAGGGGCCAGGCCTCTGCCT
TGCCCGAATAGACCTCAACTATCTGCGACAGTTGCGCCGACACCTGCCTGTGTTCCAGCACCGCAGGCCT
GACCTCTATGGCAATCTGGGTCACCCACTGTCTTAA

Translation (291 aa):
MAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLG
GKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMC
ESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWEVLLRARA
IETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRRHLPVFQHRRP
DLYGNLGHPLS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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