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Report for CCDS56798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56798.1 Public Mus musculus 11 Kat7 23 108 98 CCDS HistoryNCBI Gene:217127Re-query CCDS DB by CCDS ID:56798.1Re-query CCDS DB by GeneID:217127See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107733.9 ENSMUSP00000103361.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107733.9Link to Ensembl Protein Viewer:ENSMUSP00000103361.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107733Re-query CCDS DB by Protein ID:ENSMUSP00000103361
Original member NCBI NM_001195004.1 NP_001181933.1 Updated not alive Link to Nucleotide Sequence:NM_001195004.1Link to Protein Sequence:NP_001181933.1Re-query CCDS DB by Nucleotide ID:NM_001195004Re-query CCDS DB by Protein ID:NP_001181933
Current member NCBI NM_001195004.2 NP_001181933.1 Accepted alive Link to Nucleotide Sequence:NM_001195004.2Link to Protein Sequence:NP_001181933.1Re-query CCDS DB by Nucleotide ID:NM_001195004Re-query CCDS DB by Protein ID:NP_001181933Link to BLAST:NP_001181933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181933.1 581 Q5SVQ0-4 581 100% 0 0

Chromosomal Locations for CCDS 56798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95275786 95275887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95276443 95276549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95277469 95277615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95280391 95280484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95281501 95281641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95281839 95281928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95284029 95284220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95286330 95286440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95289772 95289870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95294563 95294645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95299979 95300218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95303133 95303309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95306049 95306196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95310035 95310049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGCCGCGAAGGAAGAGAAATGCAGGCAGTAGTTCAGATGGAACCGAAGATTCCGATTTTTCTACAGATC
TCGAGCATACAGACAGTTCAGAGAGTGATGGCACCTCGCGCCGATCTGCCCGAGTCACCCGCTCCTCAGC
CAGGCTAAGCCAGAGTTCCCAAGATTCCAGCCCTGTTCGAAATTTGCCGTCTTTCGGCACTGAGGAGCCT
GCCTATTCTACCAGAAGGGTGACCCGTAGTCAGCAGCAGCCCACGCCAGTGACTCCAAAAAAGTACCCTC
TTCGACAGACTCGCTCATCTGGCTCTGAAACGGAGCAGGTGGTGGACTTTTCAGATAGAGAAACTAAAAA
TACAGCTGATCATGATGAGTCACCACCTCGAACTCCAACCGGAAATGCACCTTCTTCTGAGTCTGACATA
GACATCTCCAGCCCCAACGTGTCTCATGATGAGAGCATTGCCAAGGACATGTCCCTGAAGGACTCAGGCA
GTGATCTCTCTCACCGTCCCAAGCGACGTCGATTTCACGAAAGCTACAATTTCAACATGAAGTGTCCTAC
GCCGGGCTGCAACTCTCTAGGACATCTTACAGGAAAGCACGAGAGACATTTCTCCATCTCAGGATGCCCG
CTGTATCATAACCTCTCAGCTGACGAATGCAAGGCACCAACAGAGAGACAGCTGCGGTATAAGGAAAAGG
TGGCTGAACTCAGGAAGAAAAGAAATTCTGGACTGAGCAAAGAGCAGAAGGAGAAATACATGGAACACAG
ACAGACCTATGGGAACACTCGGGAGCCTCTCTTGGAAAACCTGACAAGTGAATATGACTTAGATCTTTTC
CGAAGAGCACAAGCCCGGGCTTCTGAGGATTTGGAGAAGTTAAGGCTTCAAGGCCAAATCACAGAGGGAA
GCAACATGATTAAAACAATTGCTTTTGGCCGCTATGAACTGGACACTTGGTACCACTCTCCCTATCCTGA
GGAATATGCGAGGCTGGGACGTCTCTACATGTGTGAATTCTGCTTAAAGTACATGAAGAGCCAGACAATC
CTCCGCCGACACATGGCCAAGTGTGTGTGGAAACACCCCCCTGGTGATGAGATTTATCGCAAAGGCTCCA
TCTCTGTGTTTGAAGTAGACGGCAAGAAGAACAAGATCTACTGCCAAAACCTCTGCCTTTTGGCAAAGCT
TTTTCTGGACCATAAGACGCTATACTATGATGTAGAACCTTTCCTGTTCTACGTTATGACAGAAGCGGAC
AATACTGGCTGTCATCTGATTGGATATTTTTCTAAGGAGAAGAATTCATTTCTCAACTATAATGTCTCGT
GCATCCTCACCATGCCTCAGTACATGCGACAGGGCTACGGGAAGATGCTGATCGATTTCAGTTATTTACT
TTCCAAAGTAGAAGAGAAAGTCGGCTCTCCAGAGCGCCCACTGTCAGACCTGGGGCTCATAAGCTACCGC
AGCTACTGGAAGGAGGTACTGCTCCGATACCTGCACAACTTCCAGGGCAAGGAGATCTCCATCAAAGAAA
TTAGCCAGGAAACAGCTGTGAATCCCGTGGACATTGTCAGCACTCTGCAAGCCCTTCAGATGCTCAAGTA
TTGGAAAGGCAAGCACCTAGTTTTAAAGAGACAGGACCTGATAGATGAGTGGATAGCCAAAGAGGCCAAA
AGGTCCAACTCCAACAAAACCATGGATCCAAGCTGCTTAAAATGGACCCCTCCCAAGGGCACTTAA

Translation (581 aa):
MPRRKRNAGSSSDGTEDSDFSTDLEHTDSSESDGTSRRSARVTRSSARLSQSSQDSSPVRNLPSFGTEEP
AYSTRRVTRSQQQPTPVTPKKYPLRQTRSSGSETEQVVDFSDRETKNTADHDESPPRTPTGNAPSSESDI
DISSPNVSHDESIAKDMSLKDSGSDLSHRPKRRRFHESYNFNMKCPTPGCNSLGHLTGKHERHFSISGCP
LYHNLSADECKAPTERQLRYKEKVAELRKKRNSGLSKEQKEKYMEHRQTYGNTREPLLENLTSEYDLDLF
RRAQARASEDLEKLRLQGQITEGSNMIKTIAFGRYELDTWYHSPYPEEYARLGRLYMCEFCLKYMKSQTI
LRRHMAKCVWKHPPGDEIYRKGSISVFEVDGKKNKIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVMTEAD
NTGCHLIGYFSKEKNSFLNYNVSCILTMPQYMRQGYGKMLIDFSYLLSKVEEKVGSPERPLSDLGLISYR
SYWKEVLLRYLHNFQGKEISIKEISQETAVNPVDIVSTLQALQMLKYWKGKHLVLKRQDLIDEWIAKEAK
RSNSNKTMDPSCLKWTPPKGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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