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Report for CCDS15929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15929.1 Public Mus musculus 2 Tor2a 23 108 98 CCDS HistoryNCBI Gene:30933Re-query CCDS DB by CCDS ID:15929.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009707.13 ENSMUSP00000009707.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009707.13Link to Ensembl Protein Viewer:ENSMUSP00000009707.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009707Re-query CCDS DB by Protein ID:ENSMUSP00000009707
Original member NCBI NM_152800.3 NP_690013.1 Updated not alive Link to Nucleotide Sequence:NM_152800.3Link to Protein Sequence:NP_690013.1Re-query CCDS DB by Nucleotide ID:NM_152800Re-query CCDS DB by Protein ID:NP_690013
Current member NCBI NM_152800.4 NP_690013.1 Accepted alive Link to Nucleotide Sequence:NM_152800.4Link to Protein Sequence:NP_690013.1Re-query CCDS DB by Nucleotide ID:NM_152800Re-query CCDS DB by Protein ID:NP_690013Link to BLAST:NP_690013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690013.1 321 Q8R1J9-1 321 100% 0 0

Chromosomal Locations for CCDS 15929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32757300 32757450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32758671 32758936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32759527 32759702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32760589 32760716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32761496 32761740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCGGTGGCGAGGCACGGCTACCGGCCCTGGGGCTCGATCCTCGGGCTGCTCGGGCTGGCCTTGGCTG
CCGCCGCCGCCTGGGACGTGGCTTCTCTGCGCTGCACCTTCGGCTCGTTCTGCGAATGCGACTTCTGGCC
CGACTTGCCGGGTCTGGAATGTGACCTGGCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTG
GTGAAGTCACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTTCCCTGCACGGCT
GGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTGGCACAGCATCTCTTCCGGGATGGCCTTCGCAG
CCCTCACGTCCATCACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAGAAG
GAGCTCAAGAGCTGGGTTCAGGGGAACCTCACTGCCTGTGGCCGATCCCTTTTCCTCTTCGATGAGATGG
ACAAGCTGCCTCCTGGCCTGATGGAAGTCCTGCAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGAC
CAACTATCGCAAAGCCATCTTCATCTTTATCAGCAATGCTGGTGGTGAGCAGATCAACCAGGTGGCCTTG
GAGGCCTGGCGCAGCCACAGGGACAGGGAAGAAATCAGCCTACAGGAGGTGGAGCCAGTAATCTCCCGAG
CTGTGATGGACAACCCTCAACATGGCTTCTGGCGGTCTGGCATCATGGAGGAGCACCTGCTGGACGCTGT
GGTGCCCTTCCTCCCGCTCCAGCGGCATCACGTGCGCCACTGCGTACTCAATGAGCTGGCTCAGTTGGGC
CTGGAGCCCAGCGAGGAGGTGGTTCAGGCGGTGCTGGACAGCACCACCTACTTCCCTGAGGTAGAACAGC
TCTTCTCCTCCAATGGCTGCAAGACAGTGGCCTCCCGACTCACATTTTTCCTCTGA

Translation (321 aa):
MAVARHGYRPWGSILGLLGLALAAAAAWDVASLRCTFGSFCECDFWPDLPGLECDLAQHLAGQHLAKALV
VKSLKAFVQDPAPSKPLVLSLHGWTGTGKSYVSSLLAQHLFRDGLRSPHVHHFSPIIHFPHPSRTEQYKK
ELKSWVQGNLTACGRSLFLFDEMDKLPPGLMEVLQPFLGPSWVVYGTNYRKAIFIFISNAGGEQINQVAL
EAWRSHRDREEISLQEVEPVISRAVMDNPQHGFWRSGIMEEHLLDAVVPFLPLQRHHVRHCVLNELAQLG
LEPSEEVVQAVLDSTTYFPEVEQLFSSNGCKTVASRLTFFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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