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Report for CCDS20403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20403.1 Public Mus musculus 6 Lmcd1 23 108 98 CCDS HistoryNCBI Gene:30937Re-query CCDS DB by CCDS ID:20403.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032376.5 ENSMUSP00000032376.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032376.5Link to Ensembl Protein Viewer:ENSMUSP00000032376.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032376Re-query CCDS DB by Protein ID:ENSMUSP00000032376
Original member NCBI NM_144799.2 NP_659048.1 Updated not alive Link to Nucleotide Sequence:NM_144799.2Link to Protein Sequence:NP_659048.1Re-query CCDS DB by Nucleotide ID:NM_144799Re-query CCDS DB by Protein ID:NP_659048
Current member NCBI NM_144799.3 NP_659048.1 Accepted alive Link to Nucleotide Sequence:NM_144799.3Link to Protein Sequence:NP_659048.1Re-query CCDS DB by Nucleotide ID:NM_144799Re-query CCDS DB by Protein ID:NP_659048Link to BLAST:NP_659048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659048.1 365 Q8VEE1 365 100% 0 0

Chromosomal Locations for CCDS 20403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112273931 112273972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112305049 112305137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112310486 112310741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112315576 112315911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112328663 112328878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112329808 112329966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGCAAAAGTGGCTAAGGACCTCAACCCTGGAGTGCAAAAGATGTCCTTGGGCCAGCAGCAGTCCGCAA
GA
GGAGTGGCTTGTCTGCGGTGCAAGGGAATGTGCTCCGGCTTCGAGCCTCACTCGTGGAGGAAAATATG
C
AAGTCTTGTAAATGCAGCCAGGAGGAGCACTGCCTAAGCTCTGACCTGGACGATGATCGGAAAATTGGG
CGC
CTGCTGATGGACTCCAAGTATGCCACTCTCACCGCCAGGGTGAAAGGCGGAGACGGCATCCGCATCT
AT
AAGAGGAACCGCATGATCATGACCAACCCCATCGCCACCGGCAAAGACCCCACCTTTGACACTATCAC
C
TACGAGTGGGCTCCCCCAGGAGTCACCCAGAAACTGGGCCTGCAGTACATGGAACTCATCCCCAAGGAG
AGG
CAGCCTGTGACAGGCACTGAGGGTGCCCTCTACCGCCGACGCCAGCTCATGCATCAGCTCCCTATCT
AT
GACCAGGACCCCTCTCGATGCCGTGGACTTGTGGAGAATGAGCTGAAAGCTATGGAGGAGTTCGTCAA
G
CACTACAAGAGCGAGGCCCTTGGGGTGGGCGAGGTGGCCCTCCCAGGGCAGGGAGGCTTGCCCAAGGAA
GAA
AACAAGACACAGGAAAAGCCAGAGGGCACAGAGACCACTGCCCCAACCACCAATGGCAGCCTGGGTG
AT
CCATCCAAAGAAGTGGAATACGTCTGTGAGCTCTGCAAGGGAGCAGCCCCAGTTGACAGCCCTGTGGT
C
TACGCTGACAGGGCTGGATACAGCAAACAGTGGCACCCCACGTGCTTTCAGTGTATCAAGTGCTCAGAG
CCA
CTGGTGGACCTCATCTACTTCTGGAAGGATGGTGCACCCTGGTGTGGCCGCCACTACTGTGAGAGTG
TG
CGGCCCCGGTGCTCAGGCTGTGATGAGATCATCTTCTCAGAAGACTACCAGCGTGTGGAAGACCTGGC
C
TGGCATCGGAAGCACTTCATTTGCGAGGGCTGTGAGCAGCTGCTGAGCGGCCGTGCGTACATCGTCACC
AAG
GGTCAGCTCCTGTGCCCCACATGCAGCAAGTCAAAACGCTCCTGA


Translation (365 aa):
MAKVAKDLNPGVQKMSLGQQQSARGVACLRCKGMCSGFEPHSWRKICKSCKCSQEEHCLSSDLDDDRKIG
R
LLMDSKYATLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKL
GLQYMELIPKE
R
QPVTGTEGALYRRRQLMHQLPIYDQDPSRCRGLVENELKAMEEFVKHYKSEALGVGEVALPGQGGLPKE
E
NKTQEKPEGTETTAPTTNGSLGDPSKEVEY
VCELCKGAAPVDSPVVYADRAGYSKQWHPTCFQCIKCSE
P
LVDLIYFWKDGAPWCGRHYCESVRPRCSGCDE
IIFSEDYQRVEDLAWHRKHFICEGCEQLLSGRAYIVT
K
GQLLCPTCSKSKRS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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