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Report for CCDS52753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52753.1 Public Mus musculus 9 Ddx25 23 108 98 CCDS HistoryNCBI Gene:30959Re-query CCDS DB by CCDS ID:52753.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034612.6 ENSMUSP00000034612.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034612.6Link to Ensembl Protein Viewer:ENSMUSP00000034612.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034612Re-query CCDS DB by Protein ID:ENSMUSP00000034612
Original member Current member NCBI NM_013932.4 NP_038960.2 Accepted alive Link to Nucleotide Sequence:NM_013932.4Link to Protein Sequence:NP_038960.2Re-query CCDS DB by Nucleotide ID:NM_013932Re-query CCDS DB by Protein ID:NP_038960Link to BLAST:NP_038960.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038960.2 484 Q9QY15-1 484 100% 0 0

Chromosomal Locations for CCDS 52753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35541998 35542059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35543598 35543786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35545814 35545976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35546781 35547018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35551285 35551462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35552837 35552951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35554307 35554409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35554517 35554609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35556766 35556901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35557382 35557429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35557685 35557751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35558338 35558400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCGTCGTTACTTTGGGGAGGCGACGCCGGGGCGGCGGAGAGCGAGCGGCTGAACAGCCACTTTTCAA
ATCTCGTCCATCCCAGGAAGAACCTTCGTGGTATTAGGAGTACCACAGTCCCAAACATAGACGGCTCTCT
TAACACGGAAGATGATGATGATGATGAAGACGATGTAGTGGATTTGGCAGCCAATTCACTCTTAAACAAG
CTAATCCGTCAGTCCTTAATAGAATCCAGCCACCGAGTGGAAGTCTTACAGAAGGATCCCAGCTCTCCAC
TCTACTCGGTGAAAACCTTTGAAGAGCTACGGCTAAAAGAAGAATTACTAAAAGGGATTTATGCAATGGG
ATTTAACCGACCATCCAAAATCCAAGAGATGGCCCTCCCCATGATGCTAGCACACCCTCCCCAGAACCTC
ATAGCACAGAGCCAGTCCGGCACAGGAAAAACTGCTGCCTTTGTCTTAGCAATGCTAAGCCGAGTGAATG
CCTTGGAACTGTTTCCACAGTGCCTCTGCCTGGCTCCTACCTATGAACTGGCTCTGCAGACCGGTCGTGT
GGTTGAAAGGATGGGCAAGTTCTGCGTGGATGTTGAAGTGATGTATGCCATTCGAGGAAACCGAATTCCA
AGGGGCACCGAAGTCACCAAACAGATTATTATTGGTACTCCTGGGACTGTCCTAGATTGGTGTTTCAAGC
GAAAACTGATTGATTTGACAAAGATCCGTGTGTTTGTCCTGGATGAAGCAGATGTGATGATTGACACCCA
AGGATTCTCCGATCAGAGCATCCGTATCCAAAGAGCTTTACCCTCTGAATGCCAGATGCTCCTCTTTTCG
GCAACCTTTGAGGACTCTGTGTGGCAGTTTGCTGAACGAATCATTCCTGACCCCAATGTTATCAAGTTGC
GAAAAGAGGAACTGACCCTGAACAACATCCGGCAGTATTACGTGTTGTGTGAGAACAGGAAAGGCAAATA
CCAAGCCCTCTGTAACATCTACGGTGGCATCACCATTGGCCAAGCCATTATCTTCTGCCAGACACGTCGA
AATGCCAAGTGGCTGACTGTGGAGATGATGCAGGATGGCCACCAGGTGTCCCTGCTAAGTGGGGAACTCA
CAGTGGAGCAGCGAGCTTCCATCATTCAGAGATTCCGAGATGGCAAAGAGAAGGTTCTCATAACGACCAA
TGTCTGTGCTCGAGGGATTGATGTGAAGCAGGTCACCATCGTCGTGAACTTTGACCTCCCTGTAAACCAA
TCAGAAGAGCCAGACTATGAGACCTACCTCCACCGTATAGGGCGGACGGGACGCTTTGGGAAAAAAGGTC
TCGCCTTCAACATGATTGAAGTGGATAAGCTGCCCCTGCTTATGAAAATACAAGACCACTTCAATAGCAA
TATTAAGCAGCTTGACCCAGAAGACATGGATGAGATTGAGAAGATCGAATATTGA

Translation (484 aa):
MASLLWGGDAGAAESERLNSHFSNLVHPRKNLRGIRSTTVPNIDGSLNTEDDDDDEDDVVDLAANSLLNK
LIRQSLIESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNL
IAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIP
RGTEVTKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFS
ATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKGKYQALCNIYGGITIGQAIIFCQTRR
NAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQ
SEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSNIKQLDPEDMDEIEKIEY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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