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Report for CCDS78593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78593.1 Public Mus musculus 1 Abi2 23 108 98 CCDS HistoryNCBI Gene:329165Re-query CCDS DB by CCDS ID:78593.1Re-query CCDS DB by GeneID:329165See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188618.6 ENSMUSP00000140274.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188618.6Link to Ensembl Protein Viewer:ENSMUSP00000140274.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188618Re-query CCDS DB by Protein ID:ENSMUSP00000140274
Original member NCBI NM_001198570.1 NP_001185499.1 Updated not alive Link to Nucleotide Sequence:NM_001198570.1Link to Protein Sequence:NP_001185499.1Re-query CCDS DB by Nucleotide ID:NM_001198570Re-query CCDS DB by Protein ID:NP_001185499
Current member NCBI NM_001198570.2 NP_001185499.1 Accepted alive Link to Nucleotide Sequence:NM_001198570.2Link to Protein Sequence:NP_001185499.1Re-query CCDS DB by Nucleotide ID:NM_001198570Re-query CCDS DB by Protein ID:NP_001185499Link to BLAST:NP_001185499.1

Chromosomal Locations for CCDS 78593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 60409803 60409919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60434243 60434410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60437056 60437232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60438942 60438959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60443985 60444082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60447260 60447406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60448078 60448202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60450071 60450253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60453604 60453762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60470666 60470839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60476740 60476832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60478003 60478007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCGGAGCTGCAGATGCTGCTGGAAGAGGAAATCCCGGGGGGCCGCCGGGCTCTCTTCGACAGCTACA
CGAATCTGGAGCGGGTGGCCGACTACTGCGAGAATAACTACATCCAGTCACCAGATAAGCAGCGAGCCCT
AGAAGAAACCAAAGCCTACACCACTCAATCCTTAGCAAGTGTTGCGTATCTGATAAACACCTTGGCCAAC
AATGTCCTACAGATGCTGGATATCCAGGCATCACAGTTACGGAGGATGGAGTCTTCAATCAACCATATTT
CACAAACAGTTGATATTCATAAAGAGAAGGTTGCAAGAAGAGAAATTGGTATTTTGACCACCAATAAAAA
CACTTCAAGGACCCATAAGATTATTGCGCCAGCCAACCTTGAGCGGCCAGTTCGTTATATTCGAAAACCT
ATTGACTACACAATTTTAGATGACATTGGACATGGAGTGAAGTGGTTGCTTAGATTTAAGGTGAGTACCC
AGAATATGAAAATGGGTGGATTGCCACGTACGACACCTCCAACTCAGAAGCCCCCAAGTCCCCCTATGTC
AGGGAAGGGGACACTTGGGCGGCACTCCCCCTATCGAACACTGGAGCCAGTGCGTCCTCCAGTGGTACCA
AATGATTACGTACCTAGCCCAACCCGTAATATGGCTCCCTCGCAGCAGAGCCCTGTGAGGACAGCTTCTG
TGAATCAAAGAAATCGAACTTACAGCAGCAGTGGGAGCAGTGGAGGAAGTCACCCAAGTAGTCGGAGCAG
CAGTCGGGAGAACAGCGGAAGTGGTAGTGTGGGGGTACCCATTGCTGTGCCTACTCCGTCTCCTCCAAGC
GTCTTTCCAGCCCCTGCTGGCTCTGCTGGCACTCCTCCCCTTCCTGCTACTTCTGCATCTGTCCCCACCC
CTCTTGTTCCTGCTACTGTTCCCTCCTCCACTGCCCCAGACGCTGCTGCTGGGGGTGCACAGAGCCTTGC
TGATGGCTTCACTTCTCCAACTCCCCCTGTTATTTCTTCTAACCCCCCCACAGGTCATCCTGTTCAGTTC
TACAGCATGAACAGGCCTGCCTCTCGCCATACACCACCTACAATAGGGGGCTCGTTGCCCTATAGACGTC
CTCCTTCCATAACGTCACAAACAAGCCTTCAGAATCAGATGAATGGAGGTCCTTTTTATAACCAGAATCC
AGTTTCAGATACACCACCTCCACCCCCACCTGTGGAAGAGCCAGTCTTTGATGAATCCCCCCCTCCACCG
CCTCCTCCAGAAGATTATGAAGAGGAGGAAGCAGCTGTGGTTGAGTACAGCGATCCGTACGCTGAAGAGG
ACCCACCGTGGGCGCCAAGGGCTTACTTGGAAAAGGTTGTGGCAATTTATGATTATACAAAAGACAAGGA
AGATGAGCTGTCCTTTCAGGAAGGAGCCATTATATATGTCATCAAGAAGAATGACGATGAGTGA

Translation (487 aa):
MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSPDKQRALEETKAYTTQSLASVAYLINTLAN
NVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKP
IDYTILDDIGHGVKWLLRFKVSTQNMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPYRTLEPVRPPVVP
NDYVPSPTRNMAPSQQSPVRTASVNQRNRTYSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPSPPS
VFPAPAGSAGTPPLPATSASVPTPLVPATVPSSTAPDAAAGGAQSLADGFTSPTPPVISSNPPTGHPVQF
YSMNRPASRHTPPTIGGSLPYRRPPSITSQTSLQNQMNGGPFYNQNPVSDTPPPPPPVEEPVFDESPPPP
PPPEDYEEEEAAVVEYSDPYAEEDPPWAPRAYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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