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Report for CCDS85512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85512.1 Public Mus musculus 8 Thsd1 23 108 98 CCDS HistoryNCBI Gene:56229Re-query CCDS DB by CCDS ID:85512.1Re-query CCDS DB by GeneID:56229See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162447.1 ENSMUSP00000148214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162447.1Link to Ensembl Protein Viewer:ENSMUSP00000148214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162447Re-query CCDS DB by Protein ID:ENSMUSP00000148214
Original member Current member NCBI NM_001205253.1 NP_001192182.1 Accepted alive Link to Nucleotide Sequence:NM_001205253.1Link to Protein Sequence:NP_001192182.1Re-query CCDS DB by Nucleotide ID:NM_001205253Re-query CCDS DB by Protein ID:NP_001192182Link to BLAST:NP_001192182.1

Chromosomal Locations for CCDS 85512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22243122 22243956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22252153 22252311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22258292 22259670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGCTGTGGGAGGCCAACACCAATCGGACTCTTACCACTAAGTACCTCCTGACCAACCAGGCCCAAGGAA
CACTCCAGTTTGAATGTTTCTACTTCAAAGAGGCTGGTGACTACTGGTTTGTAATGATCCCGGAAGTGAC
AGACAATGGCACGCAAGTTCCACTCTGGGAGAAAAGTGCCTTTCTGAAGGTAGAATGGCCTGTCTTTCAC
ATTGATTTAAATAGGACAGCCAAGGCAGCAGAAGGCACCTTTCAAGTGGGTGTTTTTACCACCCAACCGC
TCTGCCTGTTTCCCGTGGACAAGCCAGACATGCTGGTGGATGTTATTTTCACTGACCGTCTTCCGGAGGC
AAGAGCAAGTTTGGGACAGCCGCTGGAGATCAGAGCCAGCAAAAGGACAAAACTCACTCAAGGTCAGTGG
GTCGAGTTTGGCTGTGCACCGGTAGGGGTGGAAGCCTACGTTACAGTCATGCTGAGGCTGTTGGGTCAAG
ACTCAGTCATTGCTTCTACGGGACCTATTGACCTGGCTCAAAAATTCGGATACAAATTGATGATGGCACC
GGAAGTCACGTGTGAGTCTGTGCTGGAGGTGATGGTACTGCCACCTCCTTGTGTCTTCGTCCAAGGAGTC
CTGGCTGTTTACAAAGAAGCCCCCAAACGCCCGGAGGAGAGGACTTTCCAGGTGGCTGAAAACAGACTGC
CCCTGGGAGAGAGGAGAACGGTGTTCAACTGCACTTTATTTGATGTAGGGAAGAACAAATACTGTTTTAA
CTTTGGAATTGTGAAGAAAGGCCATTTTTCTGCAAAGGAATGCATGCTAATTCAGAGAAATATAGAAACT
TGGGGACCATGGCAGCCGTGGAGCCCGTGTAGCACCACGTGCGGGGATGCTGTCCGAGAGCGTCGCCGCC
TGTGTGTCACTTCTTTCCCCTCCAGACCCAGCTGCTCTGGAATGTCCTCAGAGACCTCTCCATGCTCCCT
GGAGGAGTGTGCTGTTTTCCGGCCACCAGGCCCATCGCCTGTTTCACCCCAGGACCCTGTGAAGTCCAAC
AACGTGGTGACCGTCACAGGGATCTCCCTGTGCCTGTTCATCATCTTTGCCACGGTGCTCATCACTCTCT
GGAGGAGGTTTGGCCGAGCCCCCAAATGCAGCACGCCCGTTCGCCACAACTCCATCCATTCCCCTGGCTT
CCGGAAGAACTCCGATGAAGAGAACATCTGCGAGCTGAGTGAGCCTCGCGGAAGCTTCTCGGATGCCGGT
GACGGACCTAGGGGAAGCCCAGGGGACACGGGCATCCCATTGACTTACAGGTGCAGTGCATCAGCGCCTC
CTGAGGATGAGGCCTCGGGCAGTGAGAGCTTCCAGTCCAACGCTCAGAAGATCATCCCGCCCTTGTTTAG
CTACCGCCTTGCCCAGCAGCAGCTGAAGGAGATGAAGAAGAAAGGGCTGACCGAGACCACCAAAGTGTAC
CACGTATCTCAAAGCCCCCTGACAGACACTGTAGTGGATGCCACGGCCAGCCCTCCCTTAGACCTGGAAT
GCCCCGAAGAGGCTGCAGCAAGCAAGTTCCGAATCAAATCTCCATTTCTGGACCAGCCTGGGGCAGGTAC
CGGGGAAAGGCCTCCCTCCAGGCTGGATGGCATCGTGCCTCCTCCTGGCTGTGCGGTCAGTCCCAGCCAG
ACCCTGATCCGAAAGTCACAGATAAGGTCGACCGGTGGCAGAGATGGCTCATCGGAGAGGTGCCACTCCA
GAAGTTCCCTCTTCAGGAGGACTGCTAGTTTTCATGAAACCAAGCAGTCTCGCCCTTTCCGGGAGAGGAG
TTTGTCAGCCCTGACTCCCCGCCAGGTCCCCGCCTACAGTTCCAGGATGCGGACCTGGGACCAGATGGAG
GATAGATGTCGGCCTCCCAGTCGAAGTACCCACCTGCTTCCAGAGAGACCAGAGCACTTCCAAGGGGCAG
GTCGGACCAGCAGTCCTTTGGGTCCACTCTCCAAATCCTACACTGTGGGGCATCCCAGGAGGAAACCGGA
CCCAGGGGATCGTCAGGCCGGATTGGTGGCAGGAGCTGAGAAAATGGAGCCTCACCGAGCTCACAGGGGA
CCGTCCCCCAGTCACAGGAGTGCCTCAAGGAAGCAGTCTTCCCCCATTTTCCTCAAAGATAGCTACCAGA
AAGTCAGTCAGCTTAGCCCTTCTCACTTCAGAAAAGATAAATGCCAGAGCTTCCCCATCCACCCCGAGTT
CGCCTTCTATGACAATACCTCTTTCCGCCTCACCGAGGCTGAGCAGAGAATGCTGGACCTCCCAGGATAC
TTCGGCTCCAACGAAGAGGACGAAACCACAAGTACACTCAGTGTGGAGAAGTTAGTGATCTAG

Translation (790 aa):
MLWEANTNRTLTTKYLLTNQAQGTLQFECFYFKEAGDYWFVMIPEVTDNGTQVPLWEKSAFLKVEWPVFH
IDLNRTAKAAEGTFQVGVFTTQPLCLFPVDKPDMLVDVIFTDRLPEARASLGQPLEIRASKRTKLTQGQW
VEFGCAPVGVEAYVTVMLRLLGQDSVIASTGPIDLAQKFGYKLMMAPEVTCESVLEVMVLPPPCVFVQGV
LAVYKEAPKRPEERTFQVAENRLPLGERRTVFNCTLFDVGKNKYCFNFGIVKKGHFSAKECMLIQRNIET
WGPWQPWSPCSTTCGDAVRERRRLCVTSFPSRPSCSGMSSETSPCSLEECAVFRPPGPSPVSPQDPVKSN
NVVTVTGISLCLFIIFATVLITLWRRFGRAPKCSTPVRHNSIHSPGFRKNSDEENICELSEPRGSFSDAG
DGPRGSPGDTGIPLTYRCSASAPPEDEASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVY
HVSQSPLTDTVVDATASPPLDLECPEEAAASKFRIKSPFLDQPGAGTGERPPSRLDGIVPPPGCAVSPSQ
TLIRKSQIRSTGGRDGSSERCHSRSSLFRRTASFHETKQSRPFRERSLSALTPRQVPAYSSRMRTWDQME
DRCRPPSRSTHLLPERPEHFQGAGRTSSPLGPLSKSYTVGHPRRKPDPGDRQAGLVAGAEKMEPHRAHRG
PSPSHRSASRKQSSPIFLKDSYQKVSQLSPSHFRKDKCQSFPIHPEFAFYDNTSFRLTEAEQRMLDLPGY
FGSNEEDETTSTLSVEKLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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