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Report for CCDS36269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36269.1 Public Mus musculus 11 Hsf5 23 108 98 CCDS HistoryNCBI Gene:327992Re-query CCDS DB by CCDS ID:36269.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 36269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093956.3 ENSMUSP00000091488.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093956.3Link to Ensembl Protein Viewer:ENSMUSP00000091488.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093956Re-query CCDS DB by Protein ID:ENSMUSP00000091488
Original member Current member NCBI NM_001045527.1 NP_001038992.1 Accepted alive Link to Nucleotide Sequence:NM_001045527.1Link to Protein Sequence:NP_001038992.1Re-query CCDS DB by Nucleotide ID:NM_001045527Re-query CCDS DB by Protein ID:NP_001038992Link to BLAST:NP_001038992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038992.1 624 Q5ND04 624 100% 0 0

Chromosomal Locations for CCDS 36269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87617272 87617905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87622745 87623119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87631592 87631689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87635611 87636132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87638070 87638244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87657297 87657367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGGAGGAGGCGCTGCTGTCCACCCCCATCAACCCCAACAACTTCCCCGCCAAGCTGTGGCGGCTGGTGA
ACAGCCCTCGGTACCGCTCCATCCGCTGGGACGGCCGAGGCGAGGGGCTGCTCATCGACCAGCCGCTCTT
CGAGGCCGAGCTGCTCAGCCCGCCCGGCCCGGGTGCCGGGGGCGCGGGGGGAGCCGGGAGCAGCGGCGGG
GGCGGCGGCAGCGGCGTCGGGGCGGCCGGGGCCGAGCCGGAGCTCTTCAAAACCACCAACTTCACCAGCT
TCATCCGCCAGCTCAACCTCTACGGCTTCCGCAAGGTGGTGCTGGGTGGGCCGGGGGCGGCGGGGCCCGG
GCCCGGGCCTGGGGCTGGCGGGCCGGCGGGCGACGGGCCACTCCACCACTTCCACAGCCCGCATTTCCGC
CGCGACCAGCCTCAGCTGCTCGTTCACCTCAAGAGGCTCACCAGTGCCAACAAGGCCAAGCTGGCGGCCG
GACTGGAGGTGCCCTGTCGCCCGCCCAACCGCTTCCAGCGGCTCCTCATCACGTCAGCCTCCGCCTCGGC
CTCAGCTTCTACCTCCCCGCTGCAGCATCAGGACCCGCCGCCCCAACCTGCTGGGCCTCGGCCAGAGCAG
CATGGACCAGTGGCTGTAGGACAATTTCACCGGTCATTCCGGCGAGATAATTTGTCTCCTTATTCCTACG
TATCAACTTCATCCCACAACCACAGCGCTTTCCCTCTGAAAGGTTTAGATCGCACCCCGATTCCTCCCAG
AACGTGGCAGAACTCCCTTGGAATGCACCCTGGACAAGTGGAGACGTCTCCCACTTTTTCAGATAAAGGG
GTTCCATTTCCTGTACTGCAGAGATTTCCAACTGAGGTTACATATACGCTGCAGCCCAGCGCCACATCTG
TACACGTTCAACAAGGTCCTCAAACGATGGTCAGCTCCTCCCAAAAATATAGTAACTACACACCCTCAGC
GCAGTACTCCCAAGCCTACTATCCAACAGCTGTGCTGCAGTGCTGCTCTCCTCCCACCCACATGGACGCC
CTCAGCAGCTGTGTCACTCCTACTGCCTCTTCCTATGCACACTGTAATTACTTCCAGAATCCTCCAATGC
AATCTTCCTATCCAGTTGAATTTCTGCCTTCTAATTGGCCTTGCAGTGCTACTGATGAAAATAAAAAGAC
AGAAGTAAATCTAGAGGCTGTCTTTCAGATAGTAGATGAGTTGCACTCCTCCCCTAAGCTGGAGATGGTA
AAGGTGGAGCCTGTTGAGACTCAGTGTCCGTCATCTCAGGCTAACAGAGGCCAGCATATCTTACCCAATG
CAAACAGCAGCAACCCATCTTCCACCAGTCAGGCTAGCCAGCTGGAGCCACTCACTCCTGTAGGCTCAGA
TATTACGTCTTTTGTGGTTGGAACAGAACAAGCAATTACCTGCTCTCTACCACAGTCACCTGAGTACATC
TATACCATCCACACAGCTCAACCTTTGGAAAATAGCACAATGCAGGAATCTGCAACCATCCAACAAACTC
ATGTCAAACTGAAGGAGCAGCTAAATCATAACCCATCTCCGTCTTCAGTAGTATTTGTGCAGGAAGGGCT
ACCATTCAGCACACCGCAGGTGGATAGCAGTATAAAATGCCAGACCAATCCCTCGGAGAATATCTTGCCT
TCAGAACAAATGGGATTCCTTATTTCAGAAATGGGGCCTGCTAACAAGTCTACTAAAGACACAGGTTTAT
CCACTCCAGCTAGATACAGAGAGCGAAGAAGCAACTCACAAGGAAAGTCCCCTGATCTTCATCTGCTGGT
GGACGTGGCCTGCAAGCAGGAACACTTCCCAAAGGAGGAGGAGTTAAAAGAATGA

Translation (624 aa):
MEEALLSTPINPNNFPAKLWRLVNSPRYRSIRWDGRGEGLLIDQPLFEAELLSPPGPGAGGAGGAGSSGG
GGGSGVGAAGAEPELFKTTNFTSFIRQLNLYGFRKVVLGGPGAAGPGPGPGAGGPAGDGPLHHFHSPHFR
RDQPQLLVHLKRLTSANKAKLAAGLEVPCRPPNRFQRLLITSASASASASTSPLQHQDPPPQPAGPRPEQ
HGPVAVGQFHRSFRRDNLSPYSYVSTSSHNHSAFPLKGLDRTPIPPRTWQNSLGMHPGQVETSPTFSDKG
VPFPVLQRFPTEVTYTLQPSATSVHVQQGPQTMVSSSQKYSNYTPSAQYSQAYYPTAVLQCCSPPTHMDA
LSSCVTPTASSYAHCNYFQNPPMQSSYPVEFLPSNWPCSATDENKKTEVNLEAVFQIVDELHSSPKLEMV
KVEPVETQCPSSQANRGQHILPNANSSNPSSTSQASQLEPLTPVGSDITSFVVGTEQAITCSLPQSPEYI
YTIHTAQPLENSTMQESATIQQTHVKLKEQLNHNPSPSSVVFVQEGLPFSTPQVDSSIKCQTNPSENILP
SEQMGFLISEMGPANKSTKDTGLSTPARYRERRSNSQGKSPDLHLLVDVACKQEHFPKEEELKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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