NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79785.1 Public Mus musculus 2 Gsn 23 108 98 CCDS HistoryNCBI Gene:227753Re-query CCDS DB by CCDS ID:79785.1Re-query CCDS DB by GeneID:227753See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201185.3 ENSMUSP00000144561.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201185.3Link to Ensembl Protein Viewer:ENSMUSP00000144561.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201185Re-query CCDS DB by Protein ID:ENSMUSP00000144561
Original member Current member NCBI NM_001206367.1 NP_001193296.1 Accepted alive Link to Nucleotide Sequence:NM_001206367.1Link to Protein Sequence:NP_001193296.1Re-query CCDS DB by Nucleotide ID:NM_001206367Re-query CCDS DB by Protein ID:NP_001193296Link to BLAST:NP_001193296.1
Original member Current member NCBI NM_001206368.1 NP_001193297.1 Accepted alive Link to Nucleotide Sequence:NM_001206368.1Link to Protein Sequence:NP_001193297.1Re-query CCDS DB by Nucleotide ID:NM_001206368Re-query CCDS DB by Protein ID:NP_001193297Link to BLAST:NP_001193297.1
Original member Current member NCBI NM_001206369.1 NP_001193298.1 Accepted alive Link to Nucleotide Sequence:NM_001206369.1Link to Protein Sequence:NP_001193298.1Re-query CCDS DB by Nucleotide ID:NM_001206369Re-query CCDS DB by Protein ID:NP_001193298Link to BLAST:NP_001193298.1
Original member Current member NCBI NM_001362948.1 NP_001349877.1 Accepted alive Link to Nucleotide Sequence:NM_001362948.1Link to Protein Sequence:NP_001349877.1Re-query CCDS DB by Nucleotide ID:NM_001362948Re-query CCDS DB by Protein ID:NP_001349877Link to BLAST:NP_001349877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193296.1 731 P13020-2 731 100% 0 0
NP_001193297.1 731 P13020-2 731 100% 0 0
NP_001193298.1 731 P13020-2 731 100% 0 0
NP_001349877.1 731 P13020-2 731 100% 0 0

Chromosomal Locations for CCDS 79785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 35283914 35284109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35284674 35284828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35290333 35290494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35292587 35292736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35293478 35293567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35294935 35295067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35296125 35296213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35296366 35296581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35298795 35298928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35301466 35301556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35302491 35302661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35303168 35303342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35304264 35304388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35304581 35304658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35306546 35306606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35307497 35307666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGTGGTGGAGCACCCCGAATTCCTGAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGA
AGTTTGACCTGGTGCCTGTGCCCCCCAACCTCTATGGAGACTTCTTCACGGGTGATGCCTATGTCATCCT
AAAGACTGTGCAGCTGAGGAATGGGAATCTGCAGTATGACCTCCACTATTGGCTGGGCAATGAATGCAGC
CAGGATGAGAGCGGGGCTGCTGCCATCTTTACTGTGCAACTGGATGACTACCTGAACGGCCGGGCTGTAC
AGCACCGTGAGGTTCAGGGCTTTGAGTCGTCCACCTTCTCCGGCTACTTCAAGTCTGGACTTAAGTACAA
GAAAGGAGGTGTGGCATCTGGATTCAAACACGTGGTACCCAATGAGGTGGTGGTCCAGAGGCTCTTCCAG
GTCAAAGGACGCCGTGTAGTCCGTGCTACTGAGGTACCTGTGTCCTGGGACAGTTTCAACAATGGCGACT
GCTTCATTCTGGACCTGGGAAACAATATCTATCAGTGGTGTGGCTCTGGCAGCAACAAATTTGAAAGGCT
GAAGGCCACACAGGTGTCCAAGGGCATCCGGGACAACGAGAGGAGTGGCCGTGCTCAAGTACACGTGTCT
GAAGAGGGAGGAGAGCCAGAAGCCATGCTGCAGGTGCTGGGCCCCAAGCCAGCTCTGCCTGAAGGTACCG
AGGACACAGCCAAGGAAGATGCAGCCAACCGAAGGCTGGCCAAGCTCTACAAGGTCTCCAACGGTGCAGG
TAGCATGTCAGTCTCCCTAGTGGCTGATGAGAACCCCTTCGCCCAGGGCGCCCTGAGATCTGAGGACTGC
TTCATCCTGGACCATGGCAGAGATGGGAAAATCTTTGTTTGGAAAGGCAAGCAGGCCAACATGGAGGAGC
GGAAGGCTGCCCTCAAAACAGCCTCTGACTTCATCTCCAAGATGCAGTACCCCAGGCAGACCCAGGTTTC
AGTTCTCCCAGAGGGCGGTGAGACCCCTCTCTTTAAGCAGTTCTTCAAGAACTGGCGGGACCCAGACCAG
ACAGACGGCCCCGGCCTGGGCTACCTCTCCAGCCACATTGCCAACGTGGAGCGCGTACCTTTCGATGCTG
CTACGCTGCACACCTCCACCGCCATGGCCGCTCAGCACGGCATGGATGATGATGGAACTGGCCAGAAACA
GATCTGGAGAATTGAAGGTTCCAACAAGGTGCCAGTGGACCCTGCCACATACGGGCAGTTCTATGGAGGC
GACAGCTACATCATTCTGTACAACTACCGCCACGGTGGCCGCCAGGGACAGATCATCTACAACTGGCAGG
GTGCCCAGTCTACCCAGGATGAGGTTGCTGCTTCTGCCATCCTGACTGCCCAGCTGGATGAGGAGCTGGG
AGGAACTCCTGTCCAGAGCCGAGTGGTCCAAGGCAAAGAGCCTGCACACCTCATGAGCTTGTTTGGCGGG
AAGCCCATGATCATCTACAAGGGTGGCACCTCCCGTGATGGTGGGCAGACAGCTCCTGCCAGTATCCGCC
TCTTCCAAGTGCGAGCCAGCAGCTCTGGAGCCACCAGGGCTGTGGAGGTGATGCCTAAGTCTGGTGCTCT
GAACTCCAACGATGCCTTTGTGCTGAAAACCCCCTCCGCTGCCTACCTGTGGGTGGGCGCAGGAGCCAGT
GAGGCGGAGAAGACCGGCGCCCAGGAGCTTCTGAAGGTGCTTCGGTCCCAGCATGTGCAGGTGGAAGAAG
GCAGTGAGCCAGATGCCTTCTGGGAGGCTCTGGGCGGGAAGACTGCCTACCGCACATCCCCCAGGCTTAA
GGACAAGAAGATGGATGCCCATCCTCCTCGACTCTTTGCCTGCTCCAACAGGATCGGACGCTTTGTGATC
GAAGAGGTTCCTGGCGAGCTTATGCAGGAAGACCTGGCTACTGATGACGTCATGCTCCTGGACACCTGGG
ACCAGGTCTTTGTCTGGGTTGGAAAAGACTCCCAGGAAGAGGAAAAGACGGAAGCCTTGACTTCTGCTAA
GCGGTACATCGAGACAGATCCAGCAAATCGGGACAGGCGGACCCCCATCACAGTCGTTAGGCAGGGCTTT
GAGCCTCCTTCCTTCGTGGGCTGGTTCCTCGGCTGGGATGACAACTACTGGTCGGTGGATCCTTTGGACC
GGGCCTTGGCTGAGCTGGCTGCCTGA

Translation (731 aa):
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECS
QDESGAAAIFTVQLDDYLNGRAVQHREVQGFESSTFSGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQ
VKGRRVVRATEVPVSWDSFNNGDCFILDLGNNIYQWCGSGSNKFERLKATQVSKGIRDNERSGRAQVHVS
EEGGEPEAMLQVLGPKPALPEGTEDTAKEDAANRRLAKLYKVSNGAGSMSVSLVADENPFAQGALRSEDC
FILDHGRDGKIFVWKGKQANMEERKAALKTASDFISKMQYPRQTQVSVLPEGGETPLFKQFFKNWRDPDQ
TDGPGLGYLSSHIANVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRIEGSNKVPVDPATYGQFYGG
DSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGG
KPMIIYKGGTSRDGGQTAPASIRLFQVRASSSGATRAVEVMPKSGALNSNDAFVLKTPSAAYLWVGAGAS
EAEKTGAQELLKVLRSQHVQVEEGSEPDAFWEALGGKTAYRTSPRLKDKKMDAHPPRLFACSNRIGRFVI
EEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVRQGF
EPPSFVGWFLGWDDNYWSVDPLDRALAELAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH