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Report for CCDS39233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39233.1 Public Mus musculus 5 Taok3 23 108 98 CCDS HistoryNCBI Gene:330177Re-query CCDS DB by CCDS ID:39233.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092889.11 ENSMUSP00000090565.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092889.11Link to Ensembl Protein Viewer:ENSMUSP00000090565.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092889Re-query CCDS DB by Protein ID:ENSMUSP00000090565
Original member Current member EBI ENSMUST00000111978.7 ENSMUSP00000107609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111978.7Link to Ensembl Protein Viewer:ENSMUSP00000107609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111978Re-query CCDS DB by Protein ID:ENSMUSP00000107609
Original member Current member EBI ENSMUST00000179276.7 ENSMUSP00000136750.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179276.7Link to Ensembl Protein Viewer:ENSMUSP00000136750.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179276Re-query CCDS DB by Protein ID:ENSMUSP00000136750
Original member Current member NCBI NM_001081308.2 NP_001074777.1 Accepted alive Link to Nucleotide Sequence:NM_001081308.2Link to Protein Sequence:NP_001074777.1Re-query CCDS DB by Nucleotide ID:NM_001081308Re-query CCDS DB by Protein ID:NP_001074777Link to BLAST:NP_001074777.1
Original member Current member NCBI NM_001199685.1 NP_001186614.1 Accepted alive Link to Nucleotide Sequence:NM_001199685.1Link to Protein Sequence:NP_001186614.1Re-query CCDS DB by Nucleotide ID:NM_001199685Re-query CCDS DB by Protein ID:NP_001186614Link to BLAST:NP_001186614.1
Original member Current member NCBI NM_183306.2 NP_899129.2 Accepted alive Link to Nucleotide Sequence:NM_183306.2Link to Protein Sequence:NP_899129.2Re-query CCDS DB by Nucleotide ID:NM_183306Re-query CCDS DB by Protein ID:NP_899129Link to BLAST:NP_899129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074777.1 898 Q8BYC6 898 100% 0 0
NP_001186614.1 898 Q8BYC6 898 100% 0 0
NP_899129.2 898 Q8BYC6 898 100% 0 0

Chromosomal Locations for CCDS 39233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117193720 117193839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117198992 117199063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117200071 117200172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117203250 117203295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117204299 117204395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117206647 117206760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117209554 117209645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117215349 117215442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117217159 117217240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117225240 117225407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117227873 117228079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117241096 117241230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117250861 117251097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117252542 117252670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117255859 117256062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117263565 117263804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117265901 117266113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117272097 117272279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117273673 117273834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2697 nt):
ATGCGTAAAGGGGCACTGAAGGACCCAGAGATTGCTGATCTGTTCTTCAAGGATGACCCCGAAGAGCTTT
TTATCGATTTGCATGAAATTGGACATGGGAGCTTTGGAGCCGTGTACTTTGCGACAAATGCGCACACCAA
CGAGGTGGTCGCTGTTAAGAAAATGTCCTACAGTGGGAAGCAGACCCATGAGAAATGGCAAGATATCCTT
AAGGAAGTTAAGTTTCTGCAGCAGCTGAAGCATCCTAACACCATCGAGTACAAAGGCTGTTATTTAAAGG
AGCACACTGCATGGTTGGTGATGGAGTACTGCCTAGGTTCAGCCTCTGACTTGTTAGAAGTTCATAAGAA
ACCACTTCAGGAAGTGGAGATCGCTGCTATCACCCATGGTGCCTTGCAGGGGCTGGCCTACCTCCACTTT
CACTCCCTGATTCACAGGGACATTAAAGCAGGGAACATCCTCCTCACAGAGCCAGGTCAGGTGAAGCTGG
CTGACTTCGGATCTGCCTCCATGGCTTCTCCCGCCAACTCCTTTGTGGGGACTCCTTACTGGATGGCCCC
AGAGGTAATCTTAGCTATGGACGAAGGGCAGTACGACGGGAAAGTTGACATCTGGTCGCTTGGCATCACC
TGCATAGAGTTGGCGGAGCGGAAGCCCCCCCTCTTCAACATGAACGCCATGAGCGCCCTCTACCACATCG
CTCAGAATGACTCCCCCACGCTACAGTCCAGGGAATGGACAGACTCCTTCAGGAGATTCGTTGATTACTG
CTTGCACAAAATACCTCAGGAAAGACCAGCCGCGGTGGAGCTGTTGCGGCATGACTTCATTCGGAGGGAG
CGGCCACCGAAGGTCCTCATTGATCTCATACAGAGGACAAAAGATGCTGTCCGAGAGCTGGACAACCTGC
AGTACAGGAAAATGAAGAAGATCCTCTTCCAGGAGACTCGGAACGGACCCTTGAATGAGTCGCAAGAAGA
AGAAGAAGATGGTGAGCAAGGAAGCAACCTGAACCGAGAGGTGGACAGTCTGGGCAGCATCCACTCCATT
CCCAGCACATCAGTGAGCACAGGCAGCCGGAGCAGCAGTGTGAACAGCATGCAGGAGGTCATGGATGAGA
GCAGCTCTGAGCTCGTCATGATGCAGGAGGATGAAGGCACAGCCAACTCCAGCGCCTCCACGGTACACAA
GAAGGATCATGTATTCGTAAGGGATGAGGCGGGCCACGGCGATCCCAGGCCTGAGCCGCGGCCTACCCAG
TCAGTTCAGAGCCGGGCCCTCCACTATCGGAACCGAGAGCGCTTTGCCACGATCAAATCCGCGTCTTTGG
TTACACGGCAGATCCATGAGCATGAGCAGGAGAACGAGCTGCGGGAACAGATGTCAGGTTATAAGCGGAT
GCGGCGCCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAAGCTGAAGGCTGAGATGGATGAGCACCGC
CTCAAGCTCCAGAAGGAGGTGGAGACGCACGCCAACAACTCGTCCATCGAGCTGGAGAAGCTGGCCAAGA
AGCAAGTGGCTACCATAGAAAAGGAGGCAAAGGTAGCCGCAGCGGATGAGAAGAAGTTCCAGCAGCAGAT
CCTGGCCCAGCAGAAGAAGGACTTGACAACTTTCTTAGAAAGTCAGAAGAAGCAGTACAAGATTTGTAAG
GAGAAAATAAAAGAGGAAATGAACGAGGACCATAGCACACCCAAGAAGGAGAAGCAGGAGCGGATATCGA
AGCATAAAGAAAACCTGCAGCACACGCAGGCCGAGGAGGAAGCCCACCTGCTCACTCAACAGAGGCTGTA
CTACGACAGAAACTGCCGCTTCTTCAAACGGAAAATAATGATCAAGCGCCACGAGGTGGAACAGCAGAAC
ATTCGGGAGGAATTAAATAAGAAGAGGACCCAGAAGGAAATGGAGCACGCCATGCTGATCCGGCATGATG
AATCCACCCGAGAGCTGGAGTACAGGCAGCTGCACACCCTGCAGAAGCTCCGCATGGATCTGATCCGGCT
GCAGCACCAGACGGAACTGGAGAACCAGCTGGAGTACAATAAGAGGCGGGAGCGGGAGCTGCACCGGAAG
CACGTCATGGAGCTTCGGCAACAGCCGAAAAACTTAAAGGCCATGGAAATGCAAATTAAAAAACAGTTTC
AGGACACTTGCAAAGTACAGACCAAACAGTACAAAGCCCTCAAAAATCACCAGTTGGAAGTCACTCCAAA
GAATGAGCACAAAGCAATCCTAAAGACACTGAAGGACGAGCAGACGAGGAAGCTGGCCATTTTGGCCGAG
CAGTATGAACAGAGTATAAACGAGATGATGGCCTCTCAAGCGTTACGGCTAGACGAGGCACAAGAGGCAG
AGTGCCAGGCCTTGAGACTACAGCTCCAGCAGGAGATGGAGCTGCTCAACGCCTACCAGAGCAAAATCAA
GATGCAAACGGAGGCCCAGCACGAGCGCGAGCTACAGAAGCTAGAGCAGAGGGTGTCCCTGCGCAGAGCG
CATCTTGAGCAGAAGATTGAAGAGGAGCTGGCTGCCCTGCAGAAGGAACGCAGTGAGAGGATCAAGACTC
TCCTGGAGAGACAAGAGCGAGAGACCGAGACTTTTGACATGGAGAGCCTCAGAATGGGCTTTGGGAATTT
GGTGACATTAGATTTTCCTAAGGAGGACTATAGATGA

Translation (898 aa):
MRKGALKDPEIADLFFKDDPEELFIDLHEIGHGSFGAVYFATNAHTNEVVAVKKMSYSGKQTHEKWQDIL
KEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHF
HSLIHRDIKAGNILLTEPGQVKLADFGSASMASPANSFVGTPYWMAPEVILAMDEGQYDGKVDIWSLGIT
CIELAERKPPLFNMNAMSALYHIAQNDSPTLQSREWTDSFRRFVDYCLHKIPQERPAAVELLRHDFIRRE
RPPKVLIDLIQRTKDAVRELDNLQYRKMKKILFQETRNGPLNESQEEEEDGEQGSNLNREVDSLGSIHSI
PSTSVSTGSRSSSVNSMQEVMDESSSELVMMQEDEGTANSSASTVHKKDHVFVRDEAGHGDPRPEPRPTQ
SVQSRALHYRNRERFATIKSASLVTRQIHEHEQENELREQMSGYKRMRRQHQKQLIALENKLKAEMDEHR
LKLQKEVETHANNSSIELEKLAKKQVATIEKEAKVAAADEKKFQQQILAQQKKDLTTFLESQKKQYKICK
EKIKEEMNEDHSTPKKEKQERISKHKENLQHTQAEEEAHLLTQQRLYYDRNCRFFKRKIMIKRHEVEQQN
IREELNKKRTQKEMEHAMLIRHDESTRELEYRQLHTLQKLRMDLIRLQHQTELENQLEYNKRRERELHRK
HVMELRQQPKNLKAMEMQIKKQFQDTCKVQTKQYKALKNHQLEVTPKNEHKAILKTLKDEQTRKLAILAE
QYEQSINEMMASQALRLDEAQEAECQALRLQLQQEMELLNAYQSKIKMQTEAQHERELQKLEQRVSLRRA
HLEQKIEEELAALQKERSERIKTLLERQERETETFDMESLRMGFGNLVTLDFPKEDYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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