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Report for CCDS52613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52613.1 Public Mus musculus 8 Adgrl1 23 108 98 CCDS HistoryNCBI Gene:330814Re-query CCDS DB by CCDS ID:52613.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000141158.7 ENSMUSP00000118452.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000141158.7Link to Ensembl Protein Viewer:ENSMUSP00000118452.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000141158Re-query CCDS DB by Protein ID:ENSMUSP00000118452
Original member Current member NCBI NM_181039.2 NP_851382.2 Accepted alive Link to Nucleotide Sequence:NM_181039.2Link to Protein Sequence:NP_851382.2Re-query CCDS DB by Nucleotide ID:NM_181039Re-query CCDS DB by Protein ID:NP_851382Link to BLAST:NP_851382.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851382.2 1466 Q80TR1-1 1466 100% 0 0

Chromosomal Locations for CCDS 52613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83915499 83915568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83918820 83919033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83922999 83923108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83929464 83930264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83930962 83931276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83931613 83931716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83931968 83932153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83932372 83932410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83932508 83932691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83932840 83932962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83933426 83933640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83933877 83934047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83934427 83934636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83934718 83934938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83935064 83935130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83935542 83935633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83936020 83936188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83937197 83937325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83937461 83937557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83937649 83937777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83937916 83937933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83938350 83939086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4401 nt):
ATGGCCCGCTTGGCTGCAGCACTCTGGAGTCTCTGTGTGACGACTGTCCTTGTCACCTCTGCCACCCAAG
GCCTGAGCCGGGCTGGGCTCCCATTTGGGTTGATGCGCCGGGAGCTAGCATGTGAGGGCTACCCCATCGA
GCTGCGGTGCCCGGGGAGTGATGTCATCATGGTGGAGAATGCAAACTACGGGCGCACAGATGACAAGATC
TGCGATGCCGACCCTTTCCAGATGGAGAATGTGCAGTGCTACTTGCCTGACGCCTTCAAAATCATGTCAC
AGAGGTGTAATAACCGAACCCAGTGTGTGGTGGTGGCCGGCTCTGACGCCTTTCCTGACCCCTGTCCTGG
AACCTACAAATACCTGGAGGTGCAGTACGACTGTGTCCCTTACATCTTCGTGTGCCCAGGGACCCTGCAG
AAGGTGCTGGAGCCCACCTCTACACATGAGTCAGAGCATCAGTCTGGTGCATGGTGCAAGGACCCGCTGC
AGGCAGGTGACCGTATCTACGTTATGCCCTGGATCCCCTACCGCACGGACACATTGACTGAATATGCCTC
ATGGGAGGACTATGTAGCCGCACGCCACACCACCACGTACAGACTGCCCAACCGTGTAGATGGCACTGGC
TTTGTGGTCTACGATGGCGCAGTCTTCTACAACAAGGAGCGCACTCGCAACATTGTCAAATATGACCTGC
GGACCCGCATCAAGAGCGGGGAAACTGTCATAAACACAGCCAACTACCACGATACCTCACCTTACCGCTG
GGGAGGTAAAACCGACATTGACCTGGCAGTAGATGAGAACGGACTGTGGGTCATCTATGCAACTGAGGGC
AACAATGGGCGCTTGGTGGTAAGCCAGCTCAACCCCTACACGTTGCGTTTTGAGGGCACTTGGGAAACAG
GCTATGACAAGCGCTCGGCCTCCAATGCCTTCATGGTGTGCGGCGTCCTCTATGTGCTGCGTTCTGTCTA
TGTGGACGATGATAGCGAGGCCGCAGGCAACCGCGTGGACTATGCCTTCAACACCAATGCGAACCGTGAG
GAGCCCGTCAGTCTGGCCTTCCCCAACCCCTACCAGTTCGTATCTTCTGTTGACTACAACCCCCGGGACA
ACCAGCTCTATGTATGGAACAACTACTTTGTTGTGCGCTATAGCCTGGAGTTTGGACCCCCAGATCCCAG
TGCTGGCCCAGCCACTTCCCCGCCTCTCAGTACCACCACCACAGCCCGGCCCACACCCCTCACCAGCACA
GCCTCGCCTGCAGCCACCACTCCACTCCGCCGGGCACCCCTCACCACACACCCAGTGGGTGCCATCAACC
AGCTGGGACCTGACCTGCCTCCAGCCACAGCTCCAGCACCCAGTACCCGAAGGCCTCCAGCCCCCAATCT
GCATGTGTCCCCTGAGCTCTTCTGTGAACCCAGAGAGGTCCGGCGGGTCCAGTGGCCAGCTACCCAACAG
GGTATGCTGGTGGAGAGACCTTGCCCCAAGGGAACTCGAGGAATTGCCTCATTCCAGTGCCTCCCAGCTC
TGGGGCTCTGGAATCCTCGGGGCCCTGACCTCAGCAACTGCACTTCTCCCTGGGTCAACCAAGTAGCCCA
GAAGATCAAGAGTGGAGAGAATGCGGCCAACATTGCCAGTGAGCTGGCCCGCCACACACGGGGCTCTATC
TATGCTGGGGACGTGTCCTCCTCAGTGAAGCTGATGGAACAACTGCTAGATATCCTGGATGCCCAGCTCC
AGGCCCTACGGCCCATTGAACGAGAGTCAGCCGGCAAGAACTACAATAAGATGCACAAGCGAGAGAGAAC
CTGCAAGGACTACATCAAGGCTGTGGTGGAGACAGTGGATAACCTGCTTCGGCCGGAGGCGCTTGAGTCA
TGGAAAGACATGAATGCCACCGAACAGGTTCATACAGCCACCATGCTTCTAGATGTCCTGGAGGAGGGTG
CCTTCCTGCTGGCTGACAATGTCAGAGAACCTGCTCGCTTCTTGGCTGCCAAGCAGAACGTGGTCCTGGA
GGTAACTGTGCTGAACACGGAGGGCCAAGTGCAGGAGTTGGTGTTCCCCCAAGAGTATCCCAGTGAGAAC
TCCATTCAGCTCTCCGCCAACACCATCAAGCAGAACAGCCGCAACGGTGTGGTGAAAGTTGTCTTCATTC
TCTACAACAACCTGGGCCTCTTCTTGTCCACGGAGAATGCCACAGTGAAGCTGGCAGGTGAGGCAGGGAC
AGGTGGCCCTGGAGGTGCCTCCCTGGTGGTCAACTCACAGGTCATCGCAGCATCTATCAATAAGGAGTCT
AGCCGCGTCTTCCTCATGGACCCTGTCATCTTTACTGTAGCCCACTTGGAGGCCAAGAACCACTTCAATG
CAAACTGCTCCTTCTGGAACTACTCAGAGCGCTCCATGCTGGGCTACTGGTCAACCCAGGGCTGCCGATT
GGTGGAGTCCAATAAGACCCATACCACATGTGCCTGCAGCCACCTCACCAACTTCGCAGTGCTCATGGCT
CACCGAGAGATCTACCAAGGCCGTATTAATGAGCTGCTGCTGTCAGTCATCACCTGGGTTGGTATTGTCA
TCTCCCTGGTCTGTCTGGCTATCTGCATCTCCACCTTCTGCTTCCTGCGGGGCTTGCAGACTGACCGCAA
CACCATCCACAAGAATCTGTGCATCAACCTCTTCCTTGCGGAGCTGCTCTTCCTGGTTGGAATAGATAAA
ACTCAGTATGAGGTCGCCTGCCCTATCTTTGCGGGACTGCTGCACTACTTCTTCCTGGCCGCCTTCTCCT
GGCTGTGCCTGGAGGGCGTGCACCTCTACCTGTTGCTGGTGGAGGTGTTCGAGAGCGAGTATTCACGCAC
CAAGTACTATTACCTAGGTGGCTACTGCTTCCCAGCCCTGGTGGTCGGCATCGCAGCAGCCATTGACTAC
CGAAGCTACGGCACTGAAAAGGCCTGCTGGCTGAGGGTGGATAACTACTTCATCTGGAGCTTCATTGGGC
CCGTCTCGTTTGTCATTGTGGTGAACCTGGTGTTCCTCATGGTGACCCTGCACAAGATGATCCGAAGCTC
ATCAGTGCTCAAGCCTGACTCTAGTCGCCTTGACAACATCAAGTCCTGGGCGCTGGGTGCCATTGCACTG
CTCTTCCTGCTGGGCCTCACCTGGGCTTTCGGCCTCCTCTTCATCAACAAAGAGTCAGTAGTCATGGCCT
ATCTCTTCACTACCTTCAACGCCTTCCAGGGGGTCTTCATCTTTGTCTTTCACTGCGCCTTACAGAAAAA
GGTGCACAAGGAGTACAGCAAGTGCCTGCGTCACTCCTACTGCTGCATCCGCTCCCCACCTGGGGGCACT
CACGGCTCCCTTAAGACCTCAGCCATGCGAAGTAACACCCGATACTACACAGGGACCCAGAGCCGAATCC
GGAGGATGTGGAATGACACCGTGAGGAAGCAGACAGAGTCCTCCTTTATGGCAGGTGACATCAACAGCAC
CCCCACCCTGAACCGAGGTACCATGGGGAACCACCTACTGACCAACCCCGTGCTACAGCCTCGTGGGGGC
ACTAGCCCATACAATACACTCATTGCAGAGTCCGTGGGCTTCAATCCCTCCTCGCCCCCAGTCTTCAACT
CCCCAGGAAGCTACAGGGAACCCAAGCACCCCTTGGGAGGCCGGGAAGCCTGTGGCATGGACACCCTGCC
ACTTAACGGCAACTTCAACAACAGCTACTCCTTGCGAAGCGGTGATTTCCCTCCAGGGGATGGGGGTCCC
GAGCCACCCCGAGGCCGGAACCTGGCAGATGCTGCCGCCTTTGAGAAGATGATCATCTCAGAGCTGGTGC
ACAACAACCTGCGAGGGGCCAGTGGGGGTGCCAAAGGGCCTCCACCAGAGCCACCTGTGCCACCTGTGCC
AGGGGTCAGTGAGGACGAGGCCGGTGGACCAGGGAGTGCTGACCGGGCAGAGATTGAACTTCTCTACAAG
GCCCTGGAGGAGCCGCTGCTGCTGCCCCGGGCCCAGTCGGTGCTGTACCAGAGTGATCTGGATGAGTCGG
AGAGCTGTACGGCAGAGGATGGGGCCACCAGCCGGCCCCTCTCCTCCCCTCCCGGCCGGGACTCCCTCTA
TGCCAGCGGGGCCAACCTGCGGGACTCGCCCTCCTACCCGGACAGCAGCCCGGAAGGGCCTAATGAGGCC
CTGCCCCCGCCCCCACCTGCTCCCCCTGGGCCCCCAGAAATCTACTACACCTCTCGCCCGCCGGCCCTGG
TGGCTCGGAATCCCCTACAGGGCTACTACCAGGTGCGGCGGCCCAGCCATGAAGGCTACCTGGCAGCCCC
CAGCCTCGAGGGGCCAGGGCCCGATGGGGACGGGCAAATGCAGTTGGTCACTAGTCTCTGA

Translation (1466 aa):
MARLAAALWSLCVTTVLVTSATQGLSRAGLPFGLMRRELACEGYPIELRCPGSDVIMVENANYGRTDDKI
CDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDAFPDPCPGTYKYLEVQYDCVPYIFVCPGTLQ
KVLEPTSTHESEHQSGAWCKDPLQAGDRIYVMPWIPYRTDTLTEYASWEDYVAARHTTTYRLPNRVDGTG
FVVYDGAVFYNKERTRNIVKYDLRTRIKSGETVINTANYHDTSPYRWGGKTDIDLAVDENGLWVIYATEG
NNGRLVVSQLNPYTLRFEGTWETGYDKRSASNAFMVCGVLYVLRSVYVDDDSEAAGNRVDYAFNTNANRE
EPVSLAFPNPYQFVSSVDYNPRDNQLYVWNNYFVVRYSLEFGPPDPSAGPATSPPLSTTTTARPTPLTST
ASPAATTPLRRAPLTTHPVGAINQLGPDLPPATAPAPSTRRPPAPNLHVSPELFCEPREVRRVQWPATQQ
GMLVERPCPKGTRGIASFQCLPALGLWNPRGPDLSNCTSPWVNQVAQKIKSGENAANIASELARHTRGSI
YAGDVSSSVKLMEQLLDILDAQLQALRPIERESAGKNYNKMHKRERTCKDYIKAVVETVDNLLRPEALES
WKDMNATEQVHTATMLLDVLEEGAFLLADNVREPARFLAAKQNVVLEVTVLNTEGQVQELVFPQEYPSEN
SIQLSANTIKQNSRNGVVKVVFILYNNLGLFLSTENATVKLAGEAGTGGPGGASLVVNSQVIAASINKES
SRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLGYWSTQGCRLVESNKTHTTCACSHLTNFAVLMA
HREIYQGRINELLLSVITWVGIVISLVCLAICISTFCFLRGLQTDRNTIHKNLCINLFLAELLFLVGIDK
TQYEVACPIFAGLLHYFFLAAFSWLCLEGVHLYLLLVEVFESEYSRTKYYYLGGYCFPALVVGIAAAIDY
RSYGTEKACWLRVDNYFIWSFIGPVSFVIVVNLVFLMVTLHKMIRSSSVLKPDSSRLDNIKSWALGAIAL
LFLLGLTWAFGLLFINKESVVMAYLFTTFNAFQGVFIFVFHCALQKKVHKEYSKCLRHSYCCIRSPPGGT
HGSLKTSAMRSNTRYYTGTQSRIRRMWNDTVRKQTESSFMAGDINSTPTLNRGTMGNHLLTNPVLQPRGG
TSPYNTLIAESVGFNPSSPPVFNSPGSYREPKHPLGGREACGMDTLPLNGNFNNSYSLRSGDFPPGDGGP
EPPRGRNLADAAAFEKMIISELVHNNLRGASGGAKGPPPEPPVPPVPGVSEDEAGGPGSADRAEIELLYK
ALEEPLLLPRAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSLYASGANLRDSPSYPDSSPEGPNEA
LPPPPPAPPGPPEIYYTSRPPALVARNPLQGYYQVRRPSHEGYLAAPSLEGPGPDGDGQMQLVTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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