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Report for CCDS40951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40951.1 Public Mus musculus X Thoc2 23 108 98 CCDS HistoryNCBI Gene:331401Re-query CCDS DB by CCDS ID:40951.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047037.14 ENSMUSP00000044677.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047037.14Link to Ensembl Protein Viewer:ENSMUSP00000044677.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047037Re-query CCDS DB by Protein ID:ENSMUSP00000044677
Original member Current member NCBI NM_001033422.1 NP_001028594.1 Accepted alive Link to Nucleotide Sequence:NM_001033422.1Link to Protein Sequence:NP_001028594.1Re-query CCDS DB by Nucleotide ID:NM_001033422Re-query CCDS DB by Protein ID:NP_001028594Link to BLAST:NP_001028594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028594.1 1594 B1AZI6 1594 100% 0 0

Chromosomal Locations for CCDS 40951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 41802965 41802992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41803456 41803532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41806402 41806562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41806645 41806714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41807034 41807171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41812459 41812494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41813950 41814008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41814198 41814628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41822368 41822470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41822693 41822871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41823362 41823546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41823634 41823765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41824090 41824218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41825436 41825593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41826020 41826161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41827183 41827458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41830693 41830857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41833309 41833488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41835098 41835215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41836501 41836597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41838115 41838195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41838584 41838677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41839550 41839634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41844027 41844128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41844225 41844355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41844764 41844805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41856734 41856929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41858064 41858236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41858799 41858954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41860125 41860217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41864029 41864195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41872290 41872423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41872565 41872686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41873882 41873952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41879886 41879937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41881909 41882000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41897792 41897850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 41911801 41911871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4785 nt):
ATGGCGGCCGCGGCTGTGGTGGTTCCCGCAGAGTGGATAAAGAACTGGGAGAAATCAGGGAGAGGCGAAT
TTTTACATTTATGCCGGATTCTCAGTGAAAATAAAAGCCATGACAGTTCGACCTACAGAGATTTTCAACA
AGCTCTGTATGAGTTGTCATACCATGTCATTAAAGGGAATTTAAAGCACGAACAGGCATCTAGTGTTCTT
AATGACATTAGCGAATTCCGTGAGGATATGCCTTCTATCCTTGCTGACGTGTTCTGCATATTAGATATTG
AAACAAATTGTTTAGAAGAAAAAAGCAAGAGAGACTATTTTACACAGTTGGTATTAGCATGTTTGTATTT
AGTTTCAGACACAGTTTTGAAGGAACGATTGGATCCAGAAACTTTGGAATCATTAGGGCTTATCAAACAG
TCACAGCAGTTCAACCAAAAGTCAGTTAAAATCAAGACAAAACTCTTTTATAAGCAGCAAAAATTCAATT
TATTAAGAGAAGAAAATGAAGGTTATGCCAAGCTGATTGCTGAACTGGGACAAGATTTATCTGGAAATAT
TACTAGTGATTTAATATTAGAAAATATCAAATCTTTAATCGGATGCTTTAATCTGGATCCTAATAGAGTT
TTGGATGTCATTTTAGAAGTGTTTGAATGCAGGCCAGAACATGATGACTTCTTTATATCTTTATTAGAAT
CTTACATGAGTATGTGTGAGCCACAAACACTGTGTCATATTCTTGGATTCAAATTCAAGTTTTACCAGGA
ACCAAGTGGTGAGACGCCATCGTCTTTATACAGAGTTGCAGCAGTCCTCCTGCAATTTAATCTCATTGAT
CTAGATGATCTTTATGTGCATCTCCTTCCTGCTGATAATTGTATTATGGATGAATACAAACGAGAAATTG
TGGAAGCTAAGCAAATTGTAAGAAAACTCACAATGGTTGTGCTGTCTTCTGAAAAACTTGATGAACGAGA
CAAAGAAAAGGACAAAGATGATGAGAAAGTTGAGAAGCCACCGGACAACCAAAAGCTGGGTTTGTTGGAA
GCTTTGTTAAAAGTTGGTGATTGGCAGCATGCACAGAACATCATGGATCAGATGCCTCCATACTATGCAG
CTTCACATAAACTAATAGCTCTTGCTATTTGCAAGCTCATTCACATAACCGTTGAGCCTCTCTACCGAAG
AGTTGGTGTTCCTAAAGGTGCTAAGGGCTCACCGGTTAGCGCTTTGCAAAACAAGAGAGCACCGAAGCAA
GTAGAGAGCTTTGAAGATTTGAGGAGGGATGTATTCAATATGTTCTGTTACCTTGGTCCTCACCTCTCAC
ATGATCCCATTTTATTTGCAAAAGTCGTGCGCATAGGCAAGTCATTTATGAAGGAGTTTCAGTCTGATGG
AAGCAAACAGGAAGATAAAGAGAAAACGGAAGTTATCCTTAGCTGTTTGCTTAGCATTACTGACCAGGTA
TTACTTCCATCTCTTTCTTTGATGGACTGCAATGCTTGCATGTCTGAGGAGCTGTGGGGAATGTTTAAGA
CATTTCCCTATCAGCATAGATATCGACTATATGGTCAGTGGAAGAATGAAACTTATAATGGTCACCCACT
TTTAGTAAAAGTTAAAGCTCAAACAATAGACAGAGCCAAGTATATCATGAAGCGTCTAACCAAGGAAAAT
GTGAAGCCTTCAGGAAGACAAATTGGCAAGCTGAGCCACAGCAATCCAACAATTTTGTTTGATTATATCT
TGTCACAAATCCAGAAATACGATAACTTAATAACACCTGTAGTAGATTCATTGAAATACCTCACTTCGTT
GAATTATGATGTCTTGGCCTATTGTATCATTGAAGCTTTAGCTAATCCAGAAAAGGAAAGAATGAAACAT
GATGACACAACCATCTCAAGCTGGCTTCAGAGTCTGGCTAGTTTCTGTGGTGCAGTATTCCGTAAATACC
CGATTGATCTTGCTGGTCTTCTTCAGTATGTAGCCAATCAATTAAAGGCAGGCAAAAGTTTTGACCTACT
AATATTGAAAGAAGTGGTACAAAAAATGGCAGGAATTGAAATTACAGAGGAGATGACGATGGAGCAGTTA
GAAGCCATGACTGGTGGGGAGCAGCTAAAGGCTGAGGGTGGTTATTTCGGCCAGATCAGAAACACTAAAA
AATCTTCTCAGAGATTAAAGGATGCACTACTGGACCATGATCTTGCTCTTCCTCTCTGTTTGCTTATGGC
ACAACAGAGAAATGGGGTAATTTTTCAGGAGGGTGGAGAGAAACACTTGAAACTTGTGGGGAAACTCTAT
GACCAGTGTCATGACACCCTAGTACAGTTTGGTGGATTTTTAGCATCAAATCTAAGTACAGAAGATTATA
TAAAACGAGTGCCTTCAATTGATGTGCTCTGTAATGAGTTTCATACACCACACGATGCAGCATTTTTTCT
GTCTAGGCCAATGTATGCACACCATATTTCGTCAAAATACGATGAACTTAAAAAATCAGAAAAGGGAAGT
AAACAGCAACATAAAGTCCATAAATACATTACATCATGTGAGATGGTGATGGCTCCTGTCCATGAAGCAG
TGGTCTCCTTACATGTTTCCAAAGTCTGGGATGACATCAGTCCTCAGTTCTATGCTACATTTTGGTCATT
GACAATGTATGACCTTGCAGTTCCACATACCAGCTATGAAAGAGAAGTCAATAAACTTAAAGTCCAGATG
AAAGCGATTGATGACAATCAGGAAATGCCTCCAAATAAAAAGAAAAAAGAAAAGGAGCGTTGCACTGCCC
TTCAGGACAAGCTCCTTGAAGAAGAAAAGAAGCAGATGGAACATGTTCAAAGAGTACTTCAGAGACTGAA
ACTAGAAAAGGACAACTGGCTTTTAGCAAAGTCTACCAAAAATGAGACCATCACAAAATTTTTACAGCTG
TGTATATTTCCTCGATGCATTTTTTCAGCAATTGATGCTGTTTATTGTGCTCGTTTTGTTGAATTGGTAC
ATCAACAGAAAACTCCAAATTTTTCCACACTTCTTTGCTATGATCGAGTTTTTTCTGACATAATTTACAC
GGTTGCAAGCTGCACTGAAAATGAAGCTAGTCGGTATGGGAGATTTCTTTGCTGTATGTTAGAGACGGTG
ACCAGGTGGCATAGTGATAGAGCCACATATGAAAAGGAATGTGGAAACTATCCAGGATTCCTTACCATAT
TACGGGCAACTGGATTTGATGGTGGAAATAAAGCTGATCAGTTAGATTATGAAAATTTTCGACACGTTGT
CCACAAATGGCATTACAAACTAACCAAGGCATCAGTACATTGCCTTGAGACGGGCGAATATACTCACATC
AGGAATATATTGATTGTACTAACAAAAATACTTCCTTGGTACCCAAAAGTTTTGAATCTGGGTCAGGCTT
TGGAGAGAAGAGTGAATAAAATATGCCAAGAAGAAAAAGAGAAGAGGCCAGATCTTTATGCATTGGCTAT
GGGCTACTCGGGGCAGTTGAAAAGTAGAAAGTCACACATGATACCTGAAAATGAATTTCATCATAAGGAT
CCTCCTCCAAGGAATGCTGTTGCCAGTGTACAAAATGGGCCTGGTGGTGGGACTTCTTCATCATCTATAG
GAAATGCATCTAAATCAGATGAAAGCGGTGCTGAGGAGACTGATAAATCAAGGGAGAGATCTCAGTGTGG
TACAAAAGCTGTTAATAAGGCTTCTAGTACCACACCAAAGGGGAATTCAAGCAATGGAAATAGTGGCTCT
AACAGCAACAAAGCTGTTAAGGAAAATGACAAAGAAAAAGTAAAAGAGAAAGAAAAAGAGAAAAAGGAGA
AGACTCCAGCTACAACTCCAGAGGCCAGGGCACTTGGTAAAGATAGTAAAGAAAAACCGAAGGAAGAGCG
GCCAAATAAAGAAGACAAAGCAAGAGAGACAAAGGAAAGAACACCTAAATCTGACAAAGAGAAAGAGAAG
TTCAAGAAGGAAGAAAAAGCTAAAGATGAGAAATTCAAGACTACCGTCCCCATCGTAGAATCAAAATCGA
CTCAAGAAAGGGAAAGAGAGAAGGAGCCATCCAGAGAAAGAGATGTAGCAAAGGAAATGAAGTCAAAGGA
AAATGTTAAAGGAGGAGAAAAAACACCAGTTTCAGGGTCCTTGAAGTCACCTGTTCCCCGATCAGATATC
TCGGAGCCTGACAGGGAACAAAAACGCCGCAAAATTGATAGTCATCCTTCTCCATCACATTCCTCCACAG
TAAAGGACAGTCTCATCGATCTCAAGGACTCTTCAGCAAAGCTCTACATTAACCATAACCCTCCACCACT
GTCCAAGAGTAAGGAGAGAGAAATGGACAAGAAAGATTTGGACAAGTCAAGGGAAAGATCCAGAGAAAGA
GAGAAAAAAGATGAAAAGGACAGGAAAGAACGGAAAAGGGATCATTCAAACAATGACCGCGAAGTGCCAC
CGGACATAACAAAGAGGCGGAAAGAGGAGAATGGAACAATGGGGGTTTCAAAACACAAAAGTGAGAGTCC
ATGTGAGTCTCAATATCCAAATGAGAAAGACAAAGAGAAAAATAAGTCAAAATCTTCAGGCAAAGAAAAA
AGCAGTAGTGATTCGTTTAAGTCTGAGAAGATGGATAAAATCTCATCTGGTGGCAAAAAGGAATCCAGGC
ATGATAAAGAAAAGATAGAAAAGAAAGAAAAACGGGATAGTTCAGGAGGAAAGGAAGAGAAGAAACATCA
TAAGTCCTCTGACAAGCACAGATAA

Translation (1594 aa):
MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASSVL
NDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQ
SQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRV
LDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLID
LDDLYVHLLPADNCIMDEYKREIVEAKQIVRKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLE
ALLKVGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQ
VESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQV
LLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVKVKAQTIDRAKYIMKRLTKEN
VKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMKH
DDTTISSWLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQL
EAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLY
DQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVNKLKVQM
KAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQL
CIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETV
TRWHSDRATYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHI
RNILIVLTKILPWYPKVLNLGQALERRVNKICQEEKEKRPDLYALAMGYSGQLKSRKSHMIPENEFHHKD
PPPRNAVASVQNGPGGGTSSSSIGNASKSDESGAEETDKSRERSQCGTKAVNKASSTTPKGNSSNGNSGS
NSNKAVKENDKEKVKEKEKEKKEKTPATTPEARALGKDSKEKPKEERPNKEDKARETKERTPKSDKEKEK
FKKEEKAKDEKFKTTVPIVESKSTQEREREKEPSRERDVAKEMKSKENVKGGEKTPVSGSLKSPVPRSDI
SEPDREQKRRKIDSHPSPSHSSTVKDSLIDLKDSSAKLYINHNPPPLSKSKEREMDKKDLDKSRERSRER
EKKDEKDRKERKRDHSNNDREVPPDITKRRKEENGTMGVSKHKSESPCESQYPNEKDKEKNKSKSSGKEK
SSSDSFKSEKMDKISSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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