NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1560.1 Public Homo sapiens 1 ZNF678 24 110 108 CCDS HistoryNCBI Gene:339500Re-query CCDS DB by CCDS ID:1560.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343776.10 ENSP00000344828.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343776.10Link to Ensembl Protein Viewer:ENSP00000344828.4Re-query CCDS DB by Nucleotide ID:ENST00000343776Re-query CCDS DB by Protein ID:ENSP00000344828
Original member Current member EBI ENST00000397097.4 ENSP00000440403.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397097.4Link to Ensembl Protein Viewer:ENSP00000440403.2Re-query CCDS DB by Nucleotide ID:ENST00000397097Re-query CCDS DB by Protein ID:ENSP00000440403
Original member Current member NCBI NM_001367909.1 NP_001354838.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367909.1Link to Protein Sequence:NP_001354838.1Re-query CCDS DB by Nucleotide ID:NM_001367909Re-query CCDS DB by Protein ID:NP_001354838Link to BLAST:NP_001354838.1
Original member Current member NCBI NM_001367910.1 NP_001354839.1 Accepted alive Link to Nucleotide Sequence:NM_001367910.1Link to Protein Sequence:NP_001354839.1Re-query CCDS DB by Nucleotide ID:NM_001367910Re-query CCDS DB by Protein ID:NP_001354839Link to BLAST:NP_001354839.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001354838.1 525 Q5SXM1 525 100% 0 0
NP_001354839.1 525 Q5SXM1 525 100% 0 0

Chromosomal Locations for CCDS 1560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 227650992 227651076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227654336 227655828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGGCACAATATCACTTTGCATTGGTGTCTGTGCATTTGAAGGAGCAAACACCTCTACCAGTTTTTATA
AACTGGTTTATACAGCTATTTTATCTTATTCCATTCAAGACCTTTTGCCAGAGCAGGATATGAAAGATTT
ATGCCAAAAAGTGACACTGACAAGACATAGAAGCTGGGGCCTTGACAATTTGCACTTAGTGAAAGACTGG
AGAACTGTGAATGAAGGTAAGGGGCAGAAAGAATATTGCAATAGACTTACTCAATGTTCATCAACTAAAA
GCAAAATCTTTCAATGTATTGAATGTGGCAGAAATTTTAGCTGGAGGTCAATCCTTACTGAACATAAGAG
AATTCATACTGGAGAGAAGCCATACAAATGTGAAGAATGTGGCAAAGTTTTCAATCGATGTTCAAACCTA
ACAAAACATAAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGACGAATGTGGCAAAGTTTTTAATT
GGTGGTCACAACTAACTAACCATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGATGAATGTGA
CAAAGTTTTTAATTGGTGGTCACAACTAACTAGCCATAAGAAAATTCATAGTGGAGAGAAACCATACCCA
TGTGAAGAATGTGGCAAAGCCTTTACCCAGTTCTCAAACCTTACACAACATAAGAGAATTCATACTGGAG
AGAAACCCTACAAATGCAAAGAATGTTGCAAAGCCTTTAACAAGTTCTCAAACCTTACTCAACATAAGAG
AATTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGGCAACGTTTTTAATGAGTGCTCACACCTA
ACTAGACATAGGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAC
AGTTTGCAAGCCTTACTCGTCATAAAAGAATTCATACTGGAGAAAAACCCTACCAATGTGAAGAATGTGG
CAAAACTTTTAATCGGTGTTCACACCTAAGTAGCCATAAGAGAATTCATACTGGAGAGAAACCCTACAAA
TGTGAAGAATGTGGCAGAACCTTTACTCAATTCTCAAACCTCACTCAGCATAAAAGAATTCATACTGGAG
AGAAACCCTACAAATGCAAAGAATGTGGCAAAGCGTTTAACAAGTTCTCAAGCCTTACTCAACATAGGAG
AATTCATACTGGAGTGAAACCCTACAAATGTGAAGAATGTGGGAAAGTTTTTAAACAGTGCTCTCACCTA
ACTAGCCATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTTTACC
AATCCTCAATCCTTAGTAAGCATAAGAGAATTCATACTGAAGAGAAACCCTACAAATGTGAAGAATGTGG
CAAAGCCTTTAACCAGTTCTCAAGCCTTACTCGTCATAAAAGAATTCATACTGGAGAGAAACGCTACAAA
TGTAAAGAATGTGGAAAAGGTTTTTACCAATCCTCAATCCATAGTAAGTATAAGAGAATTTATACTGGAG
AGGAACCTGACAAATGTAAAAAATGTGGCAGTCTTTAA

Translation (525 aa):
MGTISLCIGVCAFEGANTSTSFYKLVYTAILSYSIQDLLPEQDMKDLCQKVTLTRHRSWGLDNLHLVKDW
RTVNEGKGQKEYCNRLTQCSSTKSKIFQCIECGRNFSWRSILTEHKRIHTGEKPYKCEECGKVFNRCSNL
TKHKRIHTGEKPYKCDECGKVFNWWSQLTNHKKIHTGEKPYKCDECDKVFNWWSQLTSHKKIHSGEKPYP
CEECGKAFTQFSNLTQHKRIHTGEKPYKCKECCKAFNKFSNLTQHKRIHTGEKPYKCEECGNVFNECSHL
TRHRRIHTGEKPYKCEECGKAFTQFASLTRHKRIHTGEKPYQCEECGKTFNRCSHLSSHKRIHTGEKPYK
CEECGRTFTQFSNLTQHKRIHTGEKPYKCKECGKAFNKFSSLTQHRRIHTGVKPYKCEECGKVFKQCSHL
TSHKRIHTGEKPYKCKECGKAFYQSSILSKHKRIHTEEKPYKCEECGKAFNQFSSLTRHKRIHTGEKRYK
CKECGKGFYQSSIHSKYKRIYTGEEPDKCKKCGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH