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Report for CCDS87759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87759.1 Public Homo sapiens X NHSL2 24 110 108 CCDS HistoryNCBI Gene:340527Re-query CCDS DB by CCDS ID:87759.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000633930.2 ENSP00000488668.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000633930.2Link to Ensembl Protein Viewer:ENSP00000488668.1Re-query CCDS DB by Nucleotide ID:ENST00000633930Re-query CCDS DB by Protein ID:ENSP00000488668
Original member Current member NCBI NM_001013627.3 NP_001013649.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013627.3Link to Protein Sequence:NP_001013649.2Re-query CCDS DB by Nucleotide ID:NM_001013627Re-query CCDS DB by Protein ID:NP_001013649Link to BLAST:NP_001013649.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013649.2 1225 Q5HYW2-1 1225 100% 0 0

Chromosomal Locations for CCDS 87759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71911088 71911367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72132079 72132234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72134091 72134218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72134509 72134704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72137094 72137225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72138441 72140771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72142232 72142364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72143253 72143574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3678 nt):
ATGCCGTTCTACAGGCGCACGGTGGTACCCCAGCGCCTGTGCCCGCGCAACCCGCCGCAGCAGCTGGCGG
AGCTCCGCGACGTGAGCCACCTGGCAGCGCTCAGCCTGCTCCGGCAGCTCGCCGACCTCTGTGGCCACTC
GTTGGCTCTGCTCGAGGACCTCGAGGGGCACCTGCTGGCCCTGGGGCGCCGCACAGACAGCCTGTACCGG
CGCACCGTGCGCCTCCGCCGCCGCCTTCCCTGCCGCCTGCTTGGCCCGGAGGAGGACGAGGAAGAGCTAG
CTGCAGCTAACTCGGGTCGGGAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGT
GAACGTGTTCCTCTCCTCGGGCAGGCCCCCGAGTGTAGAGGAGCTGCTTCGGGAGGCGCAGCTCAATCTC
CAGAGCCTGTTGCAAGAAGAATATGAGGAACAGTACTCGGAGGCCAGACTTGTGGGGCAGACCTTCCGCT
CTTCTGATGAGGCCACTAAGCCCACCCCCAACCCAAGGCCCCAGTCTGCCAGGCGTCTGGAGTTTATATT
GATGCCTACAAAACGGCAGCTGAGCGAGGATGAGACTACCACCCAGGGTGTGAGGGCCCCCGAGGCCTCC
CTGAGCCTGTCTACCACAGCCGACAAGCAAACTGCCTGGAATAGCCTTTTCCCTCTGCCCATCCTAGAGG
AGAAGCGGTGGCCTCAGCTTTGCTCCACGCAGTCTGACATTGTGCCCATCAACATCTCTGGGCAGCAGTT
TGATAAACATGCAAGTTTGCGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCTG
AGGCGGAGGCGGACCATTATTGGATTCTCTAACTTTTCCCAGCGAGACCAAGGTCACAGCAACAGCCCAG
CAGGCAGTGTGGCCCACTCTACCACCTCCGACATCAGGCCCAGTCACTCAGTTCCAGAAGGGGTTCATGG
AAGAGTTGCAGTTGGTCAGGATGCTCGGTTCCCAAGTCTCACCTCGCCAGTACTGAGAACTCCTTCCAGT
GAGCCGGACGAACCTCACCAGGCACGGAGTGGCCCAAACCCTCCTGGCATGGAGAGCATGGGAATGGTGT
ACAGTGTCCCCAGTTCTTGCAATGGACCTACAGAATCAACCTTCTCCACTTCCTGGAAGGGAGATGCTTT
TACCTACATGACTCCAAGTGCCACCAGCCAGAGCAATCAAGTCAATGAAAATGGGAAAAATCCTTCCTGT
GGGAATTCTTGGGTCTCTCTAAACAAAGTCCCACCTCTGGTTCCTAAGGAGGCTGCTACCCTCCTTGTCG
CTCGTGATAACCCAGCAGGATGCAGTGGGTCAGCTGGCTACCCTGAGCGCCTTATTCAGCAAAGGCACAT
GCCCGAAAGACCCTCCAAGATTGGCCTTCTGACCAGTGGGACCTCGAGGCTGGAGACAGGCCCCGGTGGG
GCCAGCAGATTCCGGGAGCGGTCACTGTCTGTGCCCACAGACTCAGGCACCACAGATGTGGACTATGATG
AGGAGCAGAAGGCCAATGAGGCCTGTGCCCTGCCTTTTGCCAGTACGAGCTCTGAGGGCAGTAACAGTGC
TGACAACATTGCCTCCCTTAGTGCCCAGCAAGAGGCCCAGCACAGAAGGCAGAGGTCCAAGAGTATCTCA
CTTAGGAAGGCCAAAAAGAAGCCTTCCCCACCCACACGCAGTGTCTCACTGGTCAAAGATGAGCCAGGCC
TCTTGCCTGAAGGTGGGTCAGCACTACCCAAGGACCAGAGGCCCAAGAGCCTTTGCCTCTCCTTGGAACA
TCAAGGACATCACTCGTCCCACCCAGATGCTCAGGGTCACCCAGCTATTCCAAACCACAAAGATCCAGAA
AGTACACAATTCTCCCACCACTGGTATCTTACTGACTGGAAGTCTGGTGACACCTACCAATCCCTGTCCA
GCTCCAGCACTGCCACTGGCACCACAGTCATTGAGTGCACCCAAGTTCAGGGCAGCTCAGAGTCTCTTGC
CTCACCTTCCACCTCCAGAGCCACTACACCTTCCCAACTCTCCATTGAAGTGGAGGCCAGGGAGATATCA
TCCCCGGGAAGGCCCCCTGGACTGATGTCACCCTCCAGTGGCTACTCCAGCCAGTCGGAAACACCAACAC
CCACTGTTTCCATGTCCCTGACCCTGGGCCACTTACCCCCTCCAAGCAGCAGTGTCCGGGTACGTCCAGT
GGTACCTGAGAGGAAGTCATCACTACCCCCGACGTCACCAATGGAGAAATTTCCCAAGTCACGGCTATCA
TTTGACCTACCACTGACCTCTTCACCCAACCTGGATCTGTCTGGGATGAGTATCTCCATCCGAAGCAAAA
CTAAGGTGAGTCGGCACCACTCAGAGACAAATTTTGGCGTCAAGCTGGCCCAGAAAACTAATCCCAACCA
GCCAATCATGCCTATGGTTACTCAGTCCGACCTACGTTCTGTTCGCCTGAGGTCGGTCAGCAAGTCTGAG
CCGGAAGATGATATTGAGAGCCCTGAGTATGCCGAGGAACCCAGAGCAGAAGAAGTCTTCACCTTGCCAG
AGAGAAAGACAAAACCTCCCGTAGCTGAGAAGCCTCCGGTGGCCCGGAGGCCTCCAAGCTTGGTCCACAA
GCCACCATCTGTTCCTGAGGAGTATGCACTAACTTCACCAACCTTGGCTATGCCCCCCAGGAGCTCAATT
CAACATGCGAGACCACTCCCTCAAGACAGCTACACGGTAGTGCGGAAACCAAAGCCCTCCAGCTTCCCAG
ATGGCAGAAGCCCAGGGGAGTCAACAGCACCCTCATCTCTTGTTTTCACGCCTTTTGCCAGTTCCTCTGA
TGCTTTCTTCTCAGGAACACAGCAGCCTCCCCAGGGAAGTGTAGAGGACGAGGGCCCCAAGGTGAGGGTT
CTGCCTGAAAGAATTAGCCTCCAGAGCCAGGAAGAAGCTGAGAAAAAGAAAGGCAAGATTCCACCTCCCG
TACCAAAAAAACCCAGCGTGCTGTACCTGCCTCTCACTTCTCCCACAGCTCAAATGGAGGCCTATGTGGC
AGAACCAAGGCTGCCTCTCAGCCCCATCATCACCCTGGAGGAAGACACCAAGTGTCCCGCCACCGGCGAT
GACCTGCAATCACTTGGTCAAAGGGTGACTTCAACTCCTCAGGCTGACAGTGAAAGGGAGGCAAGCCCTC
TGGGGAGTTCTGTGGAACCAGGCACCGAAGAAAAAAGTTTAATCAGTGATAAAACAGCTGAATGGATTGC
AGAGGATGATGATGACGTGTTTGTGGCTTCACGCACAACTGAAGATTTATTTACTGTGATACACAGGTCC
AAAAGGAAGCTGCTCGGCTGGAAGGAACCTGGTGAGGCCTTTGTGGGTGGCAGAACGAGTTCCCACTCAC
CAATAAAGAACACAGCTGAGTCTCCAATCAGTGAGTCTACCGCCACTGCAGGGTCAGGCAGCAGTGCCAA
CCTAGATGCTGGCAGAAATGACGATTTCAAGGCCTTGCTACAGAAGAAGGGAAGTAAGGCAACTCCAAGG
TCTCGTCCCTCAGCAGCTGAACTTCTGAAGACCACTAACCCACTGGCTCGGAGAATTATTGCACAATTTT
CAAAAGACTATGAAACCACCGATAACCCCAGTACCTAA

Translation (1225 aa):
MPFYRRTVVPQRLCPRNPPQQLAELRDVSHLAALSLLRQLADLCGHSLALLEDLEGHLLALGRRTDSLYR
RTVRLRRRLPCRLLGPEEDEEELAAANSGRENATATAHSRSSWRQPVNVFLSSGRPPSVEELLREAQLNL
QSLLQEEYEEQYSEARLVGQTFRSSDEATKPTPNPRPQSARRLEFILMPTKRQLSEDETTTQGVRAPEAS
LSLSTTADKQTAWNSLFPLPILEEKRWPQLCSTQSDIVPINISGQQFDKHASLRHSLFNTETAVNPKSTL
RRRRTIIGFSNFSQRDQGHSNSPAGSVAHSTTSDIRPSHSVPEGVHGRVAVGQDARFPSLTSPVLRTPSS
EPDEPHQARSGPNPPGMESMGMVYSVPSSCNGPTESTFSTSWKGDAFTYMTPSATSQSNQVNENGKNPSC
GNSWVSLNKVPPLVPKEAATLLVARDNPAGCSGSAGYPERLIQQRHMPERPSKIGLLTSGTSRLETGPGG
ASRFRERSLSVPTDSGTTDVDYDEEQKANEACALPFASTSSEGSNSADNIASLSAQQEAQHRRQRSKSIS
LRKAKKKPSPPTRSVSLVKDEPGLLPEGGSALPKDQRPKSLCLSLEHQGHHSSHPDAQGHPAIPNHKDPE
STQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREIS
SPGRPPGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSSSVRVRPVVPERKSSLPPTSPMEKFPKSRLS
FDLPLTSSPNLDLSGMSISIRSKTKVSRHHSETNFGVKLAQKTNPNQPIMPMVTQSDLRSVRLRSVSKSE
PEDDIESPEYAEEPRAEEVFTLPERKTKPPVAEKPPVARRPPSLVHKPPSVPEEYALTSPTLAMPPRSSI
QHARPLPQDSYTVVRKPKPSSFPDGRSPGESTAPSSLVFTPFASSSDAFFSGTQQPPQGSVEDEGPKVRV
LPERISLQSQEEAEKKKGKIPPPVPKKPSVLYLPLTSPTAQMEAYVAEPRLPLSPIITLEEDTKCPATGD
DLQSLGQRVTSTPQADSEREASPLGSSVEPGTEEKSLISDKTAEWIAEDDDDVFVASRTTEDLFTVIHRS
KRKLLGWKEPGEAFVGGRTSSHSPIKNTAESPISESTATAGSGSSANLDAGRNDDFKALLQKKGSKATPR
SRPSAAELLKTTNPLARRIIAQFSKDYETTDNPST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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