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Report for CCDS32438.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
32438.1 |
Public |
Homo sapiens |
16 |
ITGAD |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:3681](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:32438.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 32438.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000389202.3 |
ENSP00000373854.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000389202.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000373854.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000389202](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000373854](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_005353.3 |
NP_005344.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_005353.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_005344.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_005353](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_005344](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_005344.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_005344.2 |
1161 |
Q13349 |
1161 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 32438.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3486 nt): ATGACCTTCGGCACTGTGCTTCTTCTGAGTGTCCTGGCTTCTTATCATGGATTCAACCTGGATGTGGAGG AGCCTACGATCTTCCAGGAGGATGCAGGCGGCTTTGGGCAGAGCGTGGTGCAGTTCGGTGGATCTCGACT CGTGGTGGGAGCACCCCTGGAGGTGGTGGCGGCCAACCAGACGGGACGGCTGTATGACTGCGCAGCTGCC ACCGGCATGTGCCAGCCCATCCCGCTGCACATCCGCCCTGAGGCCGTGAACATGTCCTTGGGCCTGACCC TGGCAGCCTCCACCAACGGCTCCCGGCTCCTGGCCTGTGGCCCGACCCTGCACAGAGTCTGTGGGGAGAA CTCATACTCAAAGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATCATCCAGACAGTCCCCGACGCC ACGCCAGAGTGTCCACATCAAGAGATGGACATCGTCTTCCTGATTGACGGCTCTGGAAGCATTGACCAAA ATGACTTTAACCAGATGAAGGGCTTTGTCCAAGCTGTCATGGGCCAGTTTGAGGGCACTGACACCCTGTT TGCACTGATGCAGTACTCAAACCTCCTGAAGATCCACTTCACCTTCACCCAATTCCGGACCAGCCCGAGC CAGCAGAGCCTGGTGGATCCCATCGTCCAACTGAAAGGCCTGACGTTCACGGCCACGGGCATCCTGACAG TGGTGACACAGCTATTTCATCATAAGAATGGGGCCCGAAAAAGTGCCAAGAAGATCCTCATTGTCATCAC AGATGGGCAGAAGTACAAAGACCCCCTGGAATACAGTGATGTCATCCCCCAGGCAGAGAAGGCTGGCATC ATCCGCTACGCTATCGGGGTGGGACACGCTTTCCAGGGACCCACTGCCAGGCAGGAGCTGAATACCATCA GCTCAGCGCCTCCGCAGGACCACGTGTTCAAGGTGGACAACTTTGCAGCCCTTGGCAGCATCCAGAAGCA GCTGCAGGAGAAGATCTATGCAGTTGAGGGAACCCAGTCCAGGGCAAGCAGCTCCTTCCAGCACGAGATG TCCCAAGAAGGCTTCAGCACAGCCCTCACAATGGATGGCCTCTTCCTGGGGGCTGTGGGGAGCTTTAGCT GGTCTGGAGGTGCCTTCCTGTATCCCCCAAATATGAGCCCCACCTTCATCAACATGTCTCAGGAGAATGT GGACATGAGGGACTCTTACCTGGGTTACTCCACCGAGCTAGCCCTGTGGAAGGGGGTACAGAACCTGGTC CTGGGGGCCCCCCGCTACCAGCATACCGGGAAGGCTGTCATCTTCACCCAGGTGTCCAGGCAATGGAGGA AGAAGGCCGAAGTCACAGGGACGCAGATCGGCTCCTACTTCGGGGCCTCCCTCTGCTCTGTGGATGTGGA CAGCGATGGCAGCACCGACCTGATCCTCATTGGGGCCCCCCATTACTATGAGCAGACCCGAGGGGGCCAG GTGTCCGTGTGTCCCTTGCCTAGGGGGAGGGTGCAGTGGCAGTGTGACGCTGTTCTCCGTGGTGAGCAGG GCCACCCCTGGGGCCGCTTTGGGGCAGCCCTGACAGTGTTGGGGGATGTGAATGAGGACAAGCTGATAGA CGTGGCCATTGGGGCCCCGGGAGAGCAGGAGAACCGGGGTGCTGTCTACCTGTTTCACGGAGCCTCAGAA TCCGGCATCAGCCCCTCCCACAGCCAGCGGATTGCCAGCTCCCAGCTCTCCCCCAGGCTGCAGTATTTTG GGCAGGCGCTGAGTGGGGGTCAGGACCTCACCCAGGATGGACTGATGGACCTGGCCGTGGGGGCCCGGGG CCAGGTGCTCCTGCTCAGGAGTCTGCCGGTGCTGAAAGTGGGGGTGGCCATGAGATTCAGCCCTGTGGAG GTGGCCAAGGCTGTGTACCGGTGCTGGGAAGAGAAGCCCAGTGCCCTGGAAGCTGGGGACGCCACCGTCT GTCTCACCATCCAGAAAAGCTCACTGGACCAGCTAGGTGACATCCAAAGCTCTGTCAGGTTTGATCTGGC ACTGGACCCAGGTCGTCTGACTTCTCGTGCCATTTTCAATGAAACCAAGAACCCCACTTTGACTCGAAGA AAAACCCTGGGACTGGGGATTCACTGTGAAACCCTGAAGCTGCTTTTGCCAGATTGTGTGGAGGATGTGG TGAGCCCCATCATTCTGCACCTCAACTTCTCACTGGTGAGAGAGCCCATCCCCTCCCCCCAGAACCTGCG TCCTGTGCTGGCCGTGGGCTCACAAGACCTCTTCACTGCTTCTCTCCCCTTCGAGAAGAACTGTGGGCAA GATGGCCTCTGTGAAGGGGACCTGGGTGTCACCCTCAGCTTCTCAGGCCTGCAGACCCTGACCGTGGGGA GCTCCCTGGAGCTCAACGTGATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAACCGTGGTCAG CCTCTACTATCCAGCAGGGCTGTCGCACCGACGGGTGTCAGGAGCCCAGAAGCAGCCCCATCAGAGTGCC CTGCGCCTGGCATGTGAGACAGTGCCCACTGAGGATGAGGGCCTAAGAAGCAGCCGCTGCAGTGTCAACC ACCCCATCTTCCATGAGGGCTCTAACGGCACCTTCATAGTCACATTCGATGTCTCCTACAAGGCCACCCT GGGAGACAGGATGCTTATGAGGGCCAGTGCAAGCAGTGAGAACAATAAGGCTTCAAGCAGCAAGGCCACC TTCCAGCTGGAGCTCCCGGTGAAGTATGCAGTCTACACCATGATCAGCAGGCAGGAAGAATCCACCAAGT ACTTCAACTTTGCAACCTCCGATGAGAAGAAAATGAAAGAGGCTGAGCATCGATACCGTGTGAATAACCT CAGCCAGCGAGATCTGGCCATCAGCATTAACTTCTGGGTTCCTGTCCTGCTGAACGGGGTGGCTGTGTGG GATGTGGTCATGGAGGCCCCATCTCAGAGTCTCCCCTGTGTTTCAGAGAGAAAACCTCCCCAGCATTCTG ACTTCCTGACCCAGATTTCAAGAAGTCCCATGCTGGACTGCTCCATTGCTGACTGCCTGCAGTTCCGCTG TGACGTCCCCTCCTTCAGCGTCCAGGAGGAGCTGGATTTCACCCTGAAGGGCAATCTCAGTTTCGGCTGG GTCCGCGAGACATTGCAGAAGAAGGTGTTGGTCGTGAGTGTGGCTGAAATTACGTTCGACACATCCGTGT ACTCCCAGCTTCCAGGACAGGAGGCATTTATGAGAGCTCAGATGGAGATGGTGCTAGAAGAAGACGAGGT CTACAATGCCATTCCCATCATCATGGGCAGCTCTGTGGGGGCTCTGCTACTGCTGGCGCTCATCACAGCC ACACTGTACAAGCTTGGCTTCTTCAAACGCCACTACAAGGAAATGCTGGAGGACAAGCCTGAAGACACTG CCACATTCAGTGGGGACGATTTCAGCTGTGTGGCCCCAAATGTGCCTTTGTCCTAA
Translation (1161 aa): MTFGTVLLLSVLASYHGFNLDVEEPTIFQEDAGGFGQSVVQFGGSRLVVGAPLEVVAANQTGRLYDCAAA TGMCQPIPLHIRPEAVNMSLGLTLAASTNGSRLLACGPTLHRVCGENSYSKGSCLLLGSRWEIIQTVPDA TPECPHQEMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEGTDTLFALMQYSNLLKIHFTFTQFRTSPS QQSLVDPIVQLKGLTFTATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGI IRYAIGVGHAFQGPTARQELNTISSAPPQDHVFKVDNFAALGSIQKQLQEKIYAVEGTQSRASSSFQHEM SQEGFSTALTMDGLFLGAVGSFSWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQNLV LGAPRYQHTGKAVIFTQVSRQWRKKAEVTGTQIGSYFGASLCSVDVDSDGSTDLILIGAPHYYEQTRGGQ VSVCPLPRGRVQWQCDAVLRGEQGHPWGRFGAALTVLGDVNEDKLIDVAIGAPGEQENRGAVYLFHGASE SGISPSHSQRIASSQLSPRLQYFGQALSGGQDLTQDGLMDLAVGARGQVLLLRSLPVLKVGVAMRFSPVE VAKAVYRCWEEKPSALEAGDATVCLTIQKSSLDQLGDIQSSVRFDLALDPGRLTSRAIFNETKNPTLTRR KTLGLGIHCETLKLLLPDCVEDVVSPIILHLNFSLVREPIPSPQNLRPVLAVGSQDLFTASLPFEKNCGQ DGLCEGDLGVTLSFSGLQTLTVGSSLELNVIVTVWNAGEDSYGTVVSLYYPAGLSHRRVSGAQKQPHQSA LRLACETVPTEDEGLRSSRCSVNHPIFHEGSNGTFIVTFDVSYKATLGDRMLMRASASSENNKASSSKAT FQLELPVKYAVYTMISRQEESTKYFNFATSDEKKMKEAEHRYRVNNLSQRDLAISINFWVPVLLNGVAVW DVVMEAPSQSLPCVSERKPPQHSDFLTQISRSPMLDCSIADCLQFRCDVPSFSVQEELDFTLKGNLSFGW VRETLQKKVLVVSVAEITFDTSVYSQLPGQEAFMRAQMEMVLEEDEVYNAIPIIMGSSVGALLLLALITA TLYKLGFFKRHYKEMLEDKPEDTATFSGDDFSCVAPNVPLS
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