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Report for CCDS8909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8909.1 Public Homo sapiens 12 RNF41 24 110 108 CCDS HistoryNCBI Gene:10193Re-query CCDS DB by CCDS ID:8909.1Re-query CCDS DB by GeneID:10193See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8909.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345093.9 ENSP00000342755.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345093.9Link to Ensembl Protein Viewer:ENSP00000342755.4Re-query CCDS DB by Nucleotide ID:ENST00000345093Re-query CCDS DB by Protein ID:ENSP00000342755
Original member Current member EBI ENST00000552656.5 ENSP00000447303.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552656.5Link to Ensembl Protein Viewer:ENSP00000447303.1Re-query CCDS DB by Nucleotide ID:ENST00000552656Re-query CCDS DB by Protein ID:ENSP00000447303
Original member Current member EBI ENST00000615206.4 ENSP00000484671.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615206.4Link to Ensembl Protein Viewer:ENSP00000484671.1Re-query CCDS DB by Nucleotide ID:ENST00000615206Re-query CCDS DB by Protein ID:ENSP00000484671
Original member Current member NCBI NM_001242826.2 NP_001229755.1 Accepted alive Link to Nucleotide Sequence:NM_001242826.2Link to Protein Sequence:NP_001229755.1Re-query CCDS DB by Nucleotide ID:NM_001242826Re-query CCDS DB by Protein ID:NP_001229755Link to BLAST:NP_001229755.1
Original member Current member NCBI NM_005785.4 NP_005776.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005785.4Link to Protein Sequence:NP_005776.1Re-query CCDS DB by Nucleotide ID:NM_005785Re-query CCDS DB by Protein ID:NP_005776Link to BLAST:NP_005776.1
Original member Current member NCBI NM_194359.2 NP_919340.1 Accepted alive Link to Nucleotide Sequence:NM_194359.2Link to Protein Sequence:NP_919340.1Re-query CCDS DB by Nucleotide ID:NM_194359Re-query CCDS DB by Protein ID:NP_919340Link to BLAST:NP_919340.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229755.1 317 Q9H4P4-1 317 100% 0 0
NP_005776.1 317 Q9H4P4-1 317 100% 0 0
NP_919340.1 317 Q9H4P4-1 317 100% 0 0

Chromosomal Locations for CCDS 8909.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56206447 56206798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56207646 56207749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56208163 56208298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56210297 56210568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56213958 56214047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGGGTATGATGTAACCCGTTTCCAGGGGGATGTTGACGAAGATCTTATCTGCCCTATTTGCAGTGGAG
TCTTGGAGGAGCCAGTACAGGCACCTCATTGTGAACATGCTTTCTGCAACGCCTGCATCACCCAGTGGTT
CTCTCAGCAACAGACATGTCCAGTGGACCGTAGTGTTGTGACGGTCGCCCATCTGCGCCCAGTACCTCGG
ATCATGCGGAACATGTTGTCAAAGCTGCAGATTGCCTGTGACAACGCTGTGTTCGGCTGTAGTGCCGTTG
TCCGGCTTGACAACCTCATGTCTCACCTCAGCGACTGTGAGCACAACCCGAAGCGGCCTGTGACCTGTGA
ACAGGGCTGTGGCCTGGAGATGCCCAAAGATGAGCTGCCCAACCATAACTGCATTAAGCACCTGCGCTCA
GTGGTACAGCAGCAGCAGACACGCATCGCAGAGCTGGAGAAGACGTCAGCTGAACACAAACACCAGCTGG
CGGAGCAGAAGCGAGACATCCAGCTGCTAAAGGCATACATGCGTGCAATCCGCAGTGTCAACCCCAACCT
TCAGAACCTGGAGGAGACAATTGAATACAACGAGATCCTAGAGTGGGTGAACTCCCTTCAGCCAGCAAGA
GTGACCCGCTGGGGAGGGATGATCTCGACTCCTGATGCTGTGCTCCAGGCTGTAATCAAGCGCTCCCTGG
TGGAGAGTGGCTGTCCTGCTTCTATTGTCAACGAGCTGATTGAAAATGCCCACGAGCGTAGCTGGCCCCA
GGGTCTGGCCACACTAGAGACTAGACAGATGAACCGACGCTACTATGAGAACTACGTGGCCAAGCGCATC
CCTGGCAAGCAGGCTGTTGTCGTGATGGCCTGTGAGAACCAGCACATGGGGGATGACATGGTGCAAGAGC
CAGGCCTTGTCATGATATTTGCGCATGGCGTGGAAGAGATATAA

Translation (317 aa):
MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPR
IMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRS
VVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPAR
VTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRI
PGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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