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Report for CCDS34446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34446.1 Public Homo sapiens 6 TREML4 24 110 108 CCDS HistoryNCBI Gene:285852Re-query CCDS DB by CCDS ID:34446.1Re-query CCDS DB by GeneID:285852See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341495.7 ENSP00000342570.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341495.7Link to Ensembl Protein Viewer:ENSP00000342570.2Re-query CCDS DB by Nucleotide ID:ENST00000341495Re-query CCDS DB by Protein ID:ENSP00000342570
Original member Current member EBI ENST00000448827.6 ENSP00000418078.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448827.6Link to Ensembl Protein Viewer:ENSP00000418078.1Re-query CCDS DB by Nucleotide ID:ENST00000448827Re-query CCDS DB by Protein ID:ENSP00000418078
Original member Current member NCBI NM_198153.3 NP_937796.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198153.3Link to Protein Sequence:NP_937796.1Re-query CCDS DB by Nucleotide ID:NM_198153Re-query CCDS DB by Protein ID:NP_937796Link to BLAST:NP_937796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937796.1 200 Q6UXN2 200 100% 0 0

Chromosomal Locations for CCDS 34446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41228428 41228490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41228714 41229044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41229521 41229571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41230062 41230122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41236486 41236582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCCTGGGGTGGGGTCCACACCTGCTGCTTCCACCTGTGCTGCTGCTGCTCCTGGCCTCAGGGTGCTG
TGCCTGAAGAACTTCACAAACACCCAGGACAGACCCTCCTCCTGCAATGCCAGTACTCACCCAAGAGAGG
GCCCTATCAGCCCAAATCCTGGTGTCAGCAGACATCTCCAAGTCGGTGTACCTTACTTGTCACCAGCTCC
AAGCCCTGGACAGCAGTTCAGAAGTCTCATTACACAATCTGGGACAAGCCCAATGCTGGCTTCTTCAACA
TCACCATGATTCAGCTGACACAGAATGACTCGGGATTCTACTGGTGTGGAATCTACAACGCTTCCGAAAA
CATCATCACTGTTCTTAGAAATATCAGCCTGGTGGTGTCTCCAGCCCCAACCACGTCTCCTATGTGGACT
CTTCCCTGGCTCCCAACAAGCACAGTTCTGATCACTTCTCCAGAGGGGACCTCTGGCCATCCCTCCATCA
ATGGCTCTGAGACCAGGAAATCAAGAGCCCCTGCCTGCCTTGGCTCAGGTGGCCCCAGATTCCTGGTCTT
GGTGCTATGTGGACTCCTCCTGGCCAAGGGCCTGATGTTGTGA

Translation (200 aa):
MAWGGVHTCCFHLCCCCSWPQGAVPEELHKHPGQTLLLQCQYSPKRGPYQPKSWCQQTSPSRCTLLVTSS
KPWTAVQKSHYTIWDKPNAGFFNITMIQLTQNDSGFYWCGIYNASENIITVLRNISLVVSPAPTTSPMWT
LPWLPTSTVLITSPEGTSGHPSINGSETRKSRAPACLGSGGPRFLVLVLCGLLLAKGLML


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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