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Report for CCDS36198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36198.1 Public Mus musculus 11 Tmem102 23 108 98 CCDS HistoryNCBI Gene:380705Re-query CCDS DB by CCDS ID:36198.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051025.4 ENSMUSP00000132164.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051025.4Link to Ensembl Protein Viewer:ENSMUSP00000132164.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051025Re-query CCDS DB by Protein ID:ENSMUSP00000132164
Original member Current member NCBI NM_001033433.4 NP_001028605.2 Accepted alive Link to Nucleotide Sequence:NM_001033433.4Link to Protein Sequence:NP_001028605.2Re-query CCDS DB by Nucleotide ID:NM_001033433Re-query CCDS DB by Protein ID:NP_001028605Link to BLAST:NP_001028605.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028605.2 509 Q3UPR7 509 100% 0 0

Chromosomal Locations for CCDS 36198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69803615 69804930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69805020 69805233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCTTCCACCGTCTGGGGGGGTGCCCCCTGGTGGGGACCACCGCCCCCAGCCCCAGCCCGGCCTCTCA
CAGACATAGATTTCTGCTCGGGCGCCCAGCTGCAGGAGCTCACTCAGTTAATTCAGGAGCTCCGTGTTCA
GGAGAGTTGGAGTGAAGGGCCCAAGCCTGGAGCTGATCTTCTCCGAGCCAAGGATTTTGTCTTCGCTCTA
CTCGGTCTGGTTCACCGCCAAGACCCTCGTTTTCCACCCCAGGCAGAACTCTTGCTGCTTCGTGGTGGGA
TTCGCGAAGGTTCCCTAGATTTAGGGCACGCCCCCTTAGGTCCCTACTCCCGGGGACCTCATTATGATGC
CGGCTTTACACTCCTTGTGCCTGTGTTTTCTCTGGATGGCACTGGGCCCGAGCTGCTACTGGATCTGGAA
TCCTGTTCTGCATGGCTCCGCCTTCCAGAACTGATGCGTGGAATTTTGGTCCGGGAGGCCTGGCAGGATT
GCTTAGGACCTCCTGTCCCAGAAGAAAGTGATATGACTCACCAAACCCATAGCAAAGAGAGTCCCACCGA
CCGGGAAAACTCTGTAGATCCGTCACATGATTATGTCCCTGAACCTGAGCCACACATGTCTTTGCAAAAA
TCATCTAGTGACCTTTCAGAGTCCCAATCGTCTTATAAGGACATTACCAATCCTGAAACTCCTGAGCCAT
TGGAAACACTGAGCAGCGACGCCTTGGACGCCGACGAAAGCCAAGTCCCAAAGCCGTCGGAGGCTCCAAA
GGCATGGCCCACATTATGCCCGACCCAAGTAACTTCCTGGTTCTTCGTTAAGTTGGCTGAGGTTGCTGAG
TCCCTGATCCCGGTCCCAGGCGCCCCACGGCTAGTTCATGCAGCTCGTCACGCAGGTGTCACCACGGTCC
TCCTGGCAACTCCAGAGCCCCCACGCCACCTCCTGCTCTTCGACTTGATCCCGGTGGTGACCGTGACAGG
CTGGCCTGACACGGCTCGGAGCCACTCGTGGGCGGGTCCACTGGTCTCTGAATCGGCCTCTTTCTACCTA
GTGCCGGGCAGCCTCCCAGAGCAGCCGAGCACCTCTGGATGGCAGCTGTGCTTCGCTCGCCAGGAGCTGG
CGCTCAAAGAGCGCATCCCCACGCCGCTGCTTCAGGCACACGCGGCGGCCCAGGCGCTGCTGCGCCCGCT
GGTGGCGGGGACCCGAGCCGCTGCGCCCTACCTCCTGCGGACCTTGCTCTACTGGGCGTGCGAGCGGCTC
CCGGCGCTCTACTTGGCGCGGCCGGAAAATGCCGGCGCTTGTTGCCTTGGGCTACTGGATGAGCTGAGCC
GAGTGCTAGAGGCCGGGGCGCTGCCTCATTATTTTTTGAGCGGCCGAAAGCTCCGTGTGGGAGACGGCTC
CGCTGCTCTGCGCGGGGCATTGGCCCAGCTCCGCGGGGACCCTGCACAGGCCTTGCGTGAGGCTGTAGAG
GAAGCCAAGGTTGCCCGCAAAGGGGGCGGTTTAGCGGGCGTAGGGGGCGGGACCCATTAA

Translation (509 aa):
MASTVWGGAPWWGPPPPAPARPLTDIDFCSGAQLQELTQLIQELRVQESWSEGPKPGADLLRAKDFVFAL
LGLVHRQDPRFPPQAELLLLRGGIREGSLDLGHAPLGPYSRGPHYDAGFTLLVPVFSLDGTGPELLLDLE
SCSAWLRLPELMRGILVREAWQDCLGPPVPEESDMTHQTHSKESPTDRENSVDPSHDYVPEPEPHMSLQK
SSSDLSESQSSYKDITNPETPEPLETLSSDALDADESQVPKPSEAPKAWPTLCPTQVTSWFFVKLAEVAE
SLIPVPGAPRLVHAARHAGVTTVLLATPEPPRHLLLFDLIPVVTVTGWPDTARSHSWAGPLVSESASFYL
VPGSLPEQPSTSGWQLCFARQELALKERIPTPLLQAHAAAQALLRPLVAGTRAAAPYLLRTLLYWACERL
PALYLARPENAGACCLGLLDELSRVLEAGALPHYFLSGRKLRVGDGSAALRGALAQLRGDPAQALREAVE
EAKVARKGGGLAGVGGGTH


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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