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Report for CCDS18732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18732.1 Public Mus musculus 4 Xkr8 23 108 98 CCDS HistoryNCBI Gene:381560Re-query CCDS DB by CCDS ID:18732.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045550.4 ENSMUSP00000041205.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045550.4Link to Ensembl Protein Viewer:ENSMUSP00000041205.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045550Re-query CCDS DB by Protein ID:ENSMUSP00000041205
Original member Current member NCBI NM_201368.1 NP_958756.1 Accepted alive Link to Nucleotide Sequence:NM_201368.1Link to Protein Sequence:NP_958756.1Re-query CCDS DB by Nucleotide ID:NM_201368Re-query CCDS DB by Protein ID:NP_958756Link to BLAST:NP_958756.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958756.1 401 Q8C0T0 401 100% 0 0

Chromosomal Locations for CCDS 18732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132727855 132728570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132730876 132731072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132732173 132732465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGCCTCTGTCCGTGCACCACCATGTGGCCTTAGACGTGGTCGTAGGCCTGGTGAGTATCTTGTCTTTCC
TGCTGGATCTGGTCGCTGACCTGTGGGCCGTTGTCCAGTACGTGCTCCTTGGCCGTTATCTGTGGGCCGC
GCTGGTACTGGTCCTGCTGGGCCAAGCTTCGGTGCTGCTGCAGCTCTTCAGCTGGCTCTGGCTGACAGCT
GATCCCACCGAGCTGCACCATTCGCAGCTCTCGCGTCCTTTCCTGGCTCTGCTGCACCTGCTGCAGCTCG
GCTACCTGTATAGGTGTTTGCACGGAATGCATCAAGGGCTGTCCATGTGCTACCAGGAGATGCCATCCGA
GTGTGACCTGGCCTACGCAGACTTTCTCTCCCTGGACATCAGCATGCTGAAGCTTTTCGAGAGCTTCCTG
GAGGCGACGCCACAGCTCACACTGGTGCTGGCAATTGTATTGCAGAATGGCCAGGCGGAATACTACCAGT
GGTTTGGCATCAGCTCATCCTTTCTTGGCATCTCGTGGGCACTGCTGGATTACCATCGGTCTCTGCGTAC
CTGTCTTCCCTCCAAGCCACGCCTGGGCCGGAGTTCCTCTGCTATCTACTTCCTGTGGAACCTGCTGCTG
CTGGGGCCCAGAATCTGTGCCATCGCCTTGTTCTCAGCTGTCTTCCCCTACTATGTGGCCCTGCATTTCT
TCAGCCTGTGGCTGGTACTTTTGTTCTGGATCTGGCTTCAAGGCACAAATTTTATGCCTGACTCCAAAGG
TGAGTGGCTGTACCGGGTGACAATGGCCCTCATCCTCTATTTCTCCTGGTTCAACGTGTCTGGGGGCCGC
ACTCGAGGCCGGGCCGTCATCCACCTGATCTTCATCTTCAGTGACAGTGTTCTGCTGGTCACCACCTCCT
GGGTGACACACGGCACCTGGCTGCCCAGTGGGATCTCATTGCTGATGTGGGTGACAATAGGAGGAGCCTG
CTTCTTCCTGGGACTGGCTTTGCGTGTGATCTACTACCTCTGGCTGCACCCTAGCTGCAGCTGGGACCCT
GACCTCGTGGATGGGACCCTAGGACTCCTTTCTCCCCATCGTCCTCCTAAGCTGATTTATAACAGGCGTG
CCACCCTGTTAGCAGAGAACTTCTTCGCCAAGGCCAAAGCTCGGGCTGTCCTGACAGAGGAGGTGCAGCT
GAATGGAGTCCTCTGA

Translation (401 aa):
MPLSVHHHVALDVVVGLVSILSFLLDLVADLWAVVQYVLLGRYLWAALVLVLLGQASVLLQLFSWLWLTA
DPTELHHSQLSRPFLALLHLLQLGYLYRCLHGMHQGLSMCYQEMPSECDLAYADFLSLDISMLKLFESFL
EATPQLTLVLAIVLQNGQAEYYQWFGISSSFLGISWALLDYHRSLRTCLPSKPRLGRSSSAIYFLWNLLL
LGPRICAIALFSAVFPYYVALHFFSLWLVLLFWIWLQGTNFMPDSKGEWLYRVTMALILYFSWFNVSGGR
TRGRAVIHLIFIFSDSVLLVTTSWVTHGTWLPSGISLLMWVTIGGACFFLGLALRVIYYLWLHPSCSWDP
DLVDGTLGLLSPHRPPKLIYNRRATLLAENFFAKAKARAVLTEEVQLNGVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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